View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_18 (Length: 280)
Name: NF20240_low_18
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 29490172 - 29490428
Alignment:
| Q |
18 |
agaatattctatatgcttcaaatattaggtnnnnnnnnccactaactttatatataacatgctttatattgttcaaaaagtgacaacctataattcactt |
117 |
Q |
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| T |
29490172 |
agaatattctatatccttcgaatattaggtaaaaaaaaccactaactttataaataacatgctctatattgttcacaa-gtaacaacctataattcactt |
29490270 |
T |
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| Q |
118 |
a------ggatttagtgattctctacaatcatggcaactgaggtggttttgttggatacatgggttagcatgtttggtatgagggttaggattgcattag |
211 |
Q |
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| T |
29490271 |
tcacttgggatttagtgattctctacaatcatggcaaacgaggtagttttgttggatacatgggttagcatgtttggtatgagggttagaattgcattag |
29490370 |
T |
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| Q |
212 |
ctgaaaagggagttcaatatgagtacaaagaagaaaatcttagagataaaagtcctat |
269 |
Q |
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| T |
29490371 |
ctgaaaagggagttcaatatgagtacaaagaagaaaatcttagagataaaagtcctat |
29490428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 29488197 - 29488329
Alignment:
| Q |
135 |
tacaatcatggcaactgaggtggttttgttggatacatgggttagcatgtttggtatgagggttaggattgcattagctgaaaagggagttcaatatgag |
234 |
Q |
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| T |
29488197 |
tacaatcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgag |
29488296 |
T |
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| Q |
235 |
tacaaagaagaaaatcttagagataaaagtcct |
267 |
Q |
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| T |
29488297 |
tacaaagaagaagatctcagaaataagagtcct |
29488329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 267
Target Start/End: Original strand, 29502368 - 29502527
Alignment:
| Q |
108 |
taattcacttaggatttagtgattctctacaatcatggcaactgaggtggttttgttggatacatgggttagcatgtttggtatgagggttaggattgca |
207 |
Q |
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| T |
29502368 |
taattaacataggatttagtgatcttcaagagtcatggcaaacgaagtggttctgttggatacatggtttagcatgtttgggatgagagttaagattgca |
29502467 |
T |
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| Q |
208 |
ttagctgaaaagggagttcaatatgagtacaaagaagaaaatcttagagataaaagtcct |
267 |
Q |
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| T |
29502468 |
ttagctgaaaaaagtgttaaatacgagtgtaaagaagaaaatctcagaaataagagtcct |
29502527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 267
Target Start/End: Complemental strand, 30256874 - 30256742
Alignment:
| Q |
135 |
tacaatcatggcaactgaggtggttttgttggatacatgggttagcatgtttggtatgagggttaggattgcattagctgaaaagggagttcaatatgag |
234 |
Q |
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| T |
30256874 |
tacaatcatggcaaacgaggtaattctgtcagatacatgggctagcgtgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgag |
30256775 |
T |
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| Q |
235 |
tacaaagaagaaaatcttagagataaaagtcct |
267 |
Q |
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| T |
30256774 |
tacaaagaagaagatcttagaaataagagtcct |
30256742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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