View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_19 (Length: 280)
Name: NF20240_low_19
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 35442988 - 35443146
Alignment:
| Q |
19 |
atttaaccacttattttacataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
118 |
Q |
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| T |
35442988 |
atttaaccacttattttaaataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
35443087 |
T |
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| Q |
119 |
atacaaaatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca |
177 |
Q |
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| T |
35443088 |
atacaaaatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca |
35443146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 35443205 - 35443298
Alignment:
| Q |
175 |
acaaacataaaa-aaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattctattctaaatcaacaatgagtgaagtgtatcatat |
267 |
Q |
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| T |
35443205 |
acaaacataaaaaaaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattctattctaaatcaacaatgagtgaagtgtatcatat |
35443298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 16780358 - 16780329
Alignment:
| Q |
24 |
accacttattttacataaatatatgtattt |
53 |
Q |
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| T |
16780358 |
accacttattttacataaatatatgtattt |
16780329 |
T |
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