View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20240_low_2 (Length: 539)
Name: NF20240_low_2
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Original strand, 39566547 - 39567060
Alignment:
| Q |
17 |
attatatagtgtgcaaaaagtaaattggaaatgctttccaggaagctgctcttattcttgagcactaacatagtgtattatataaaattgatccaatatc |
116 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39566547 |
attatatagtgtgcaaaaagtaaactggaaatgctttccaggaagctgctcttattcttgagcactaacatagtgtattatataaaattgatccaatatc |
39566646 |
T |
|
| Q |
117 |
tcagttgtgctctttgtgaatatattaataccatcttaatcttaaactatgcacatgagattgtgtagaagattatatcttattaaagaaaacctttaga |
216 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39566647 |
taagttgtgctctttgtgaatatattaataccatcttaatcttaaactatgcacatgagattgtgtagaagattatatcttattaaagaaaacctttaga |
39566746 |
T |
|
| Q |
217 |
atctcgaaaggctagattttccaatttggctcttgttattctgatatggtattgggttatgaatccacagtatcttaatgcaatccataactgggacccc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39566747 |
atctcgaaaggctagattttccaatttggctcttgttattctgatatggtattgggttatgaatccacagtatcttaatgcaatccataactgggacccc |
39566846 |
T |
|
| Q |
317 |
aaaagtaacattagaataagcaaggtttttgtactgactaaaattcttgaatgctggtatcaattgacagccatcaataaagctagaacctcagttggca |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39566847 |
aaaagtaacattagaataagcaaggtttttgtactgactaaaattcttgaatgctggtatcaattgacagccatcaataaagctagaacctcagttggca |
39566946 |
T |
|
| Q |
417 |
tttttatctgattaaactcacttagttgtaataatgtacattattattttgaaaacatgtacggaattttcctaccactcattaagcttacaaatatata |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39566947 |
tttttatctgattaaactcacttagttgtaataatgtacattattattttgaaaacatgtacggaattttcctaccactcattaagcttacaaatatata |
39567046 |
T |
|
| Q |
517 |
gtctgtgtctctgc |
530 |
Q |
| |
|
|||||||||||||| |
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|
| T |
39567047 |
gtctgtgtctctgc |
39567060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 531
Target Start/End: Original strand, 39561867 - 39562384
Alignment:
| Q |
16 |
cattatatagtgtgcaaaaagtaaattggaaatgctttccaggaagctgctcttattcttgagcactaacatagtgtattatataaaattgatccaatat |
115 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
39561867 |
cattatatagtgtggaaaaggtaaattggaaatgctttccaggaagctgctcttatccttgagcactaacatagtgtatagtataaaattgatccaatat |
39561966 |
T |
|
| Q |
116 |
ctcagttgtgctctttgtgaatatattaataccatcttaatcttaaactatgcacatgagattgtgtagaagattatatcttattaaagaaaacctttag |
215 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
39561967 |
ctcagttgtgccttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgagattgtgttgaagattatatcttattaaagaaaacctttag |
39562066 |
T |
|
| Q |
216 |
aatctcgaaaggctagattttccaatttggctcttgttattctgatatggtattgggttatgaatccacagtatcttaatgcaatccataactgggaccc |
315 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39562067 |
aatctcgaaaggctggattttccaatttggctcttgttagtctgatatggtattggtttatgaatccacagtatcttaatgcaatccataactgggaccc |
39562166 |
T |
|
| Q |
316 |
caaaagtaacattagaataagcaaggtttttgtactgactaaaattcttgaatgctggtatcaattgacagccatcaataaagctagaa-cctcagttgg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| |||||| |||||||||| |
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|
| T |
39562167 |
caaaagtaacattagaataagcaaggtttttgtactgactaaagttcttgaatgctggcctcaattggcagccatcaataaaactagaaccctcagttgg |
39562266 |
T |
|
| Q |
415 |
catttttatctgattaaactcacttagttgtaataatgtacatt-attat--tttgaaaacatgtacggaattttcctaccactcattaagcttacaaat |
511 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||| |||||||||||| ||||| || |||||||| | | |||||||||||||||||| ||||||||| |
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|
| T |
39562267 |
cattcttatctaattaaactcac-tagttgtgataatgtacattaattattattagaaaacat-tgcaaaattttcctaccactcatcaagcttacagta |
39562364 |
T |
|
| Q |
512 |
atatagtctgtgtctctgct |
531 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
39562365 |
atatagtctgtgtctctgct |
39562384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 39572063 - 39572498
Alignment:
| Q |
17 |
attatatagtgtgcaaaaagtaaattggaaatgctttccaggaagctgctcttattcttgagcactaacatagtgtattatataaaattgatccaatatc |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||| |||| |||| |
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|
| T |
39572063 |
attatatagtgttgaaaaagtaaattggaaatgctttacaggaagctgctcttatccttgaacactaa------------tataaaatttgtccagtatc |
39572150 |
T |
|
| Q |
117 |
tcagttgtgctctttgtgaatatattaataccatcttaatcttaaactatgcacatgagattgtgtagaagattatatcttattaaagaaaacctttaga |
216 |
Q |
| |
|
|||||||| | |||| |||||||||| ||||| |||||||||| | |||||||||||||||||| ||| ||||||||||||| |||||||||||||| |
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|
| T |
39572151 |
tcagttgttcattttgcgaatatattactaccaacttaatcttatatcatgcacatgagattgtgttgaatattatatcttattgtagaaaacctttaga |
39572250 |
T |
|
| Q |
217 |
-------atctcgaaaggctagattttccaatttggctcttgttattctgatatggtattgggttatgaatccacagtatcttaatgcaatccataactg |
309 |
Q |
| |
|
|||| |||||||||||||||||||||| || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39572251 |
gtttagaatcttgaaaggctagattttccaattttcctattgttagtctgatttggtattgggttatgaatccacagtatcttaatgcaatccataactg |
39572350 |
T |
|
| Q |
310 |
ggaccccaaaagtaacattagaataagcaaggtttttgtactgactaaaattcttgaatgctggtatcaattgacagccatcaataaagctagaa-cctc |
408 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||| || | | ||| ||||||||||| |||||| |||| |
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|
| T |
39572351 |
ggacaccaaaagtaatattagaataaccaaggtttttgtactaactaaaacccttgaatgctggcttccact-aca-ccatcaataaaactagaaccctc |
39572448 |
T |
|
| Q |
409 |
agttggcatttttatctgattaaactcacttagttgtaataatgtacatta |
459 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||||| ||||||||||||| |
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|
| T |
39572449 |
agttggcattcttatctaattaaactcac-tagttgtgataatgtacatta |
39572498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 39560558 - 39560749
Alignment:
| Q |
17 |
attatatagtgtgcaaaaagtaaattggaaatgctttccaggaagctgctcttattcttgagcactaacatagtgtattatataaaattgatccaatatc |
116 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||||||||||| |||| || |||||| |||| |||||||||||| |||| ||||||||||||||| |||| |
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|
| T |
39560558 |
attatgtagtgtggaaaaagtaaataggaaatgctttccatgaagttgatcttatctttgaacactaacatagtatattgtataaaattgatccagtatc |
39560657 |
T |
|
| Q |
117 |
tcagttgtgctctttgtgaatatattaataccatcttaatcttaaactatgcacatgagattgtgtagaagattatatcttattaaagaaaa |
208 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||| |||| || |||||||| ||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
39560658 |
tcagttgtgccttttgtgaatatattaataccaacttattcttgaatcatgcacatcagattatgttgaagattatatattattaaagaaaa |
39560749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 113 - 251
Target Start/End: Complemental strand, 39584755 - 39584617
Alignment:
| Q |
113 |
tatctcagttgtgctctttgtgaatatattaataccatcttaatcttaaactatgcacatgagattgtgtagaagattatatcttattaaagaaaacctt |
212 |
Q |
| |
|
|||||||||||||| ||||||||||||| | |||| |||||||||||| |||| ||| ||||||||| |||||||||| ||| ||||||||||||| |
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|
| T |
39584755 |
tatctcagttgtgccttttgtgaatatatggacaccaacttaatcttaaatcatgcgcattagattgtgttcaagattatattttactaaagaaaacctt |
39584656 |
T |
|
| Q |
213 |
tagaatctcgaaaggctagattttccaatttggctcttg |
251 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39584655 |
gtaaatctcgaaaggctagattttctaatttggctcttg |
39584617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 39581146 - 39580986
Alignment:
| Q |
100 |
aaaattgatccaatatctcagttgtgctctttgtgaatatattaataccatcttaatcttaaactatgcacat-------gagattgtgtagaagattat |
192 |
Q |
| |
|
|||||||||| | ||||||||||||||| |||||| |||||||||||||| |||||| || || |||||||| |||||||||| |||||| || |
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|
| T |
39581146 |
aaaattgatctagtatctcagttgtgctttttgtgcatatattaataccaacttaatattgaatcatgcacattgcacatgagattgtgttgaagatcat |
39581047 |
T |
|
| Q |
193 |
at--cttattaaagaaaacctttagaatctcgaaaggctagattttccaatttggctcttg |
251 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
39581046 |
ataccttattaaagaaaaagtttagaatctcgaaaggctagattttacaattttgctcttg |
39580986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 39574603 - 39574473
Alignment:
| Q |
121 |
ttgtgctctttgtgaatatattaataccatcttaatcttaaactatgcacatgagattgtgtagaagattat-atcttattaaagaaaacctttagaatc |
219 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||||||| |||||||| ||||||| |||||| | ||| |||||||||||||| || ||||| |
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|
| T |
39574603 |
ttgtgctttttgtgaatattttaataccaaattaatcttaaac-atgcacatcagattgttctaaagattttaatcatattaaagaaaacc-ttggaatc |
39574506 |
T |
|
| Q |
220 |
tcgaaaggctagattttccaatttggctcttgt |
252 |
Q |
| |
|
| |||||| | |||||||||||| || |||||| |
|
|
| T |
39574505 |
tagaaagggtggattttccaattcggatcttgt |
39574473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 39581221 - 39581181
Alignment:
| Q |
16 |
cattatatagtgtgcaaaaagtaaattggaaatgctttcca |
56 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
39581221 |
cattatatagtgtggaaaaagtaatgtggaaatgctttcca |
39581181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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