View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_21 (Length: 262)
Name: NF20240_low_21
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 15495419 - 15495172
Alignment:
| Q |
1 |
tatctacactggcatctatggtaagtactactaacagatgtaattcatcataaaaaactgtcatatggtgactgactcaaagatcaaaattgt-aaatcg |
99 |
Q |
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| T |
15495419 |
tatctacactggcatctatggtaagtactactaacagatgtaattcatcataaaaaactgtcatatggtgaccaactcaaagatcaaaattgtcaaatcg |
15495320 |
T |
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| Q |
100 |
gttgctaacattagcacattagtgactaatggtttagcgacatttttcaaatcggcatgtatttgaattaat-ataaaattactttagcaactgatttgc |
198 |
Q |
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| T |
15495319 |
gttgctaacattagcacattagtgactaatggtttagcgacatttttcaaatcggcatgtatttgaattaataaaaaaattactttagcgactgatttgc |
15495220 |
T |
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| Q |
199 |
agaccgatttagatcggtctctaaataaagagttgagtagttcatatg |
246 |
Q |
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| T |
15495219 |
ggaccgatttagatcggtctctaaatagagaattgagtagttcatatg |
15495172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 15519460 - 15519306
Alignment:
| Q |
1 |
tatctacactggcatctatggtaagtactactaacagatgtaattcatcataaaaaactgtcatatggtgactgactcaaagatcaaaattgt-aaatcg |
99 |
Q |
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| T |
15519460 |
tatctacacaggcatctatggtaagtattactaacggttgtaattcatcagaaaaaattgtcatatagtgaccgattcaaagatcggaattgtccaaccc |
15519361 |
T |
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| Q |
100 |
gttgctaacattagcacattagtgactaatggtttagcgacatttttcaaatcgg |
154 |
Q |
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| T |
15519360 |
attgctaacattagaacatttgcgactaatggtttggcgacatttcacaaatcgg |
15519306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 15608604 - 15608488
Alignment:
| Q |
1 |
tatctacactggcatctatggtaagtactactaacagatgtaattcatcat--aaaaaactgtcatatggtgactgactcaaagatcaaaattgt-aaat |
97 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||| | || ||||||||||| ||| | |||| | | | ||||| ||||||| |||| |
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| T |
15608604 |
tatctacactggcatctatggtaagtattactaacagttgtaattctttataaaaaaaactgtcgtattgcgacttatttagagatcgaaattgtcaaat |
15608505 |
T |
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| Q |
98 |
cggttgctaacattagc |
114 |
Q |
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|||| ||||||||||| |
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| T |
15608504 |
aggttcctaacattagc |
15608488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 15626655 - 15626541
Alignment:
| Q |
1 |
tatctacactggcatctatggtaagtactactaacagatgtaattcatcataaaaaactgtcatatggtgactgact--caaagatcaaaattgtaaatc |
98 |
Q |
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|||| ||| |||||||||||||||||| || | | || || ||||||| | ||||||||||||||| |||||||| | | |||| ||||||| |||| |
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| T |
15626655 |
tatccacaatggcatctatggtaagtattagtgaaagttgaaattcattaaaaaaaactgtcatatagtgactgatttagagagattgaaattgtcaatc |
15626556 |
T |
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| Q |
99 |
ggttgctaacattag |
113 |
Q |
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| T |
15626555 |
ggttgctaacattag |
15626541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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