View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_23 (Length: 249)
Name: NF20240_low_23
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 1954120 - 1954354
Alignment:
| Q |
16 |
atatattatctttcctccactcatagaatttaacacaaaaattgtaacatttctcttctcatcccattcccattcatcaaagcaaacatgttcaaaaagt |
115 |
Q |
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| T |
1954120 |
atatattatctttcctccactcatagaatttaacacaaaaattgtaaaatttctcttctcatcccattcccattcatcaaagcaaacatgttcaaaaagt |
1954219 |
T |
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| Q |
116 |
gtagtcatgtaatttatgtgatgaatttgatttttcttgtactc-tattaatatacattttacttacaaaacgtgtaacctaaaagaatctagaagctaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1954220 |
gtagtcatgtaatttatgtgatgaatttgatttttcttgtactcttattaatatacattttacttataaaacgtgtaacctaaaagaatctagaagctaa |
1954319 |
T |
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| Q |
215 |
acttaattggatagagatgaacatgagtatagtcg |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
1954320 |
acttaattggatagagatgaacatgagtatagtcg |
1954354 |
T |
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