View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_26 (Length: 237)
Name: NF20240_low_26
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 29094055 - 29094117
Alignment:
| Q |
159 |
tggatgggatacatatacataatacatgcatctagttaactaagttcaatatcgtgtattgtt |
221 |
Q |
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| T |
29094055 |
tggatgggatacatatacataatacatgcatctagttaactaagttcaatatcgtgtattgtt |
29094117 |
T |
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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 29093933 - 29093993
Alignment:
| Q |
104 |
aagttgcattgtaagtatcatggccaaacagactaaaaaatgattgttattcatatggatg |
164 |
Q |
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| T |
29093933 |
aagttgcattgtaagtatcatggccaaacggactaaaaaatgattgttattcatatggatg |
29093993 |
T |
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