View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_27 (Length: 234)
Name: NF20240_low_27
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 42789286 - 42789485
Alignment:
| Q |
17 |
atcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataaggtggatgttcttttt |
116 |
Q |
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| T |
42789286 |
atcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataaggtggatgttcttttt |
42789385 |
T |
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| Q |
117 |
tgtcacaaagtcaagaatttcttctagaactgaacgtttaactgttatacctaacgggtttgaagggtttgtgatcagcactccactcactttcatgttc |
216 |
Q |
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| T |
42789386 |
tgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgggtttgaagggtttgtgatcagcactccactcactttcatgttc |
42789485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 42798824 - 42799023
Alignment:
| Q |
17 |
atcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataaggtggatgttcttttt |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798824 |
atcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataaggtggatgttcttttt |
42798923 |
T |
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| Q |
117 |
tgtcacaaagtcaagaatttcttctagaactgaacgtttaactgttatacctaacgggtttgaagggtttgtgatcagcactccactcactttcatgttc |
216 |
Q |
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| T |
42798924 |
tgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgggtttgaagggtttgtgatcagcactccactcactttcatgttc |
42799023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 34567012 - 34567096
Alignment:
| Q |
70 |
actgatcctgagtagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtt |
154 |
Q |
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||||| || ||||||||||||||||||| |||||| |||||||| ||||| |||| ||||| || || ||||||||||||| |
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| T |
34567012 |
actgagcccgagtagatttcgtctgagacaaggtgtatgttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgtt |
34567096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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