View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_29 (Length: 214)
Name: NF20240_low_29
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 7808732 - 7808542
Alignment:
| Q |
13 |
cagagataataccaaatttaccatcaacttctctaaaatccaagtagaagaaacagcatgtagtaaaaacaagtactaggaaaaatccaacaacaaccaa |
112 |
Q |
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| T |
7808732 |
cagaaataataccaaatttaccatcaacttctctaaaatccaagtagaagaaacagcatgtagtaaaaacaagtactaggaaaaatccaacaacaaccaa |
7808633 |
T |
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| Q |
113 |
agacggttcaaacaaccttaaacgcttcaccttccttaatgtttcaaacaataccatgtcttgtt---ccacgtgttggtttgaagaattt |
200 |
Q |
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| T |
7808632 |
agacggttcaaacaaccttaaacgcttcaccttccttaatgtttcaaacaataccatgtcttgttccaccacgtgttggtttgaagaattt |
7808542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 7816452 - 7816379
Alignment:
| Q |
33 |
ccatcaacttctctaaaatccaagtagaagaaacagcatgtagtaaaaacaagtactaggaaaaatccaacaac |
106 |
Q |
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| T |
7816452 |
ccatcaacttctctaaactccaagtagaagaaacaacatgttgtaaaggcaagaactaggaaaaagccaacaac |
7816379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 7816382 - 7816346
Alignment:
| Q |
37 |
caacttctctaaaatccaagtagaagaaacagcatgt |
73 |
Q |
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| T |
7816382 |
caacttctctaaactccaagtagaagaaacaacatgt |
7816346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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