View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_6 (Length: 423)
Name: NF20240_low_6
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 52850310 - 52850696
Alignment:
| Q |
19 |
ctgtgtacttggatgtagagctcagacgtttgtcctttttaaaggacactttttctagtggaaatcaaactacaggagtagaaggtcatgatgttacacc |
118 |
Q |
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| T |
52850310 |
ctgtgtacttggatgtagagctcagacgtttgtcctttttaaaggacactttttctagtggaaatcaaactacaggagtagaaggtcatgatgtcacacc |
52850409 |
T |
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| Q |
119 |
caattcgaggtaaaataaatttgctgcttctcgagtagattttgaaatacaattcgcatttacatttgtaaacatgatcaaccatgttcattgattttca |
218 |
Q |
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| T |
52850410 |
caattcgaggtaaaatat-tttgctgcttctcgagtagattttgaaatacaattcgcagttacatttgtaaacatgatcaaccatgttcattgattttca |
52850508 |
T |
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| Q |
219 |
ccggacaaattagtttattttgcatgtgtcatatttttgttatatatggtgcaagacataatgaccgatgtttcactgaaaatatgaagcatgtgatcat |
318 |
Q |
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| T |
52850509 |
ccggacaagttagtttattttgcatgtgtcatatttttgttatatatggtgcaagacataatgactgatgtttcactgaaaatatgaagcatgtgatcat |
52850608 |
T |
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| Q |
319 |
cccatgagatgaaacataatggctggtgtttcactttgaatactttacatcaaacacttgcataaagtcacaattatatgctattttt |
406 |
Q |
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| T |
52850609 |
cccatgagatgaaacataatggctggtgtttcactttgaatgctttacatcaaacacttgcataaagtcacaattatatgctattttt |
52850696 |
T |
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