View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_7 (Length: 412)
Name: NF20240_low_7
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 244 - 375
Target Start/End: Complemental strand, 26225756 - 26225615
Alignment:
| Q |
244 |
gcaacagcgaatacgattatggttttgattatgatgattatgaaagatgttt-----attgtttat-----tgttaatagtagcaggaatgacgtcagtt |
333 |
Q |
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| T |
26225756 |
gcaacagcgaatacgattatggttttgattatgatgattatgaaggatgtatctatgattttatatgaaagtgataatagtagcaggaatgacgtcagtt |
26225657 |
T |
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| Q |
334 |
catgttaaggtaacaattgcttttgattatatatcctgagtt |
375 |
Q |
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| T |
26225656 |
catgttaaggtaacaattgcttttgattatatatcctgagtt |
26225615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 26225892 - 26225835
Alignment:
| Q |
102 |
gacaacagtggtaatggaggtgttggttatgtgtatgagtataacaacaatgacggta |
159 |
Q |
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| T |
26225892 |
gacaacagtggtaatggaggtgttggttatgtgtatgagtataacaacaatgacggta |
26225835 |
T |
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