View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20240_low_8 (Length: 387)
Name: NF20240_low_8
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20240_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 10600834 - 10601204
Alignment:
| Q |
12 |
atgaagatgatatgagttttgactctctttctgtttctaagaaacgaaaggtaagagaagaaccttttcttattccagagaatgctaagctcatttccat |
111 |
Q |
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| T |
10600834 |
atgaagatgatatgagttttgactctctttctggttctaagaaacgaaaggtaagagaagaaccttttcttattccagagaatgctaagatcatttccat |
10600933 |
T |
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| Q |
112 |
tgatgatga---------agggtcggagcagtgtgatgagaagatgtttgagggtgtttttgatgttaaaaaggaagtaaagagtggaggaagtggcgag |
202 |
Q |
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| T |
10600934 |
tgatgatgatgataatgaagggtcggagcagtgtgatgagaagatgtttgagggtgtttttgatgttaaaaaggaagtaaaaagtggaggaagtggcaag |
10601033 |
T |
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| Q |
203 |
ttttatgctaaagatggaacagttgaaaactcgattacaataatttcagatgaatatggtgaaagtgatgaaaaacactccatgaaacgaaagttaaaag |
302 |
Q |
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| T |
10601034 |
ttttatgctaaagatggaacagttgaaaacccgattacaataatttcagatgaatatggtgaaagtgatgaaaaacactccaagaaacgaaagttaaaag |
10601133 |
T |
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| Q |
303 |
aagaaccttttgttgttcatgataattctgaggttattttcattgatattggtgatgagaagatgtttgtg |
373 |
Q |
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| T |
10601134 |
aagaaccttttgttgttcatgataattctgaggttattttctttgatattggtgatgagaagatgtttgtg |
10601204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 16824617 - 16824549
Alignment:
| Q |
113 |
gatgatgaagggtcggagcagtgtgatgagaagatgtttgagggtgtttttgatgttaaaaaggaagta |
181 |
Q |
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| T |
16824617 |
gatgaagaagggttgttgcaatgtgatgagaagatgtttgagggttgtgttgatgttgaaaaagaagta |
16824549 |
T |
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