View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20240_low_9 (Length: 381)

Name: NF20240_low_9
Description: NF20240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20240_low_9
NF20240_low_9
[»] chr3 (1 HSPs)
chr3 (273-347)||(27405330-27405404)
[»] chr2 (1 HSPs)
chr2 (273-343)||(5589763-5589833)
[»] chr5 (1 HSPs)
chr5 (274-347)||(38919745-38919818)
[»] chr8 (1 HSPs)
chr8 (158-242)||(18808758-18808843)
[»] chr4 (1 HSPs)
chr4 (158-237)||(51291115-51291195)
[»] chr1 (1 HSPs)
chr1 (272-336)||(17441515-17441578)


Alignment Details
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 27405404 - 27405330
Alignment:
Q  273 tggaaaaagctaaaacgcatgacataaaattttgtcaccattgcacgaatgagttgtatgttgtagttagagtac 347  Q
    |||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27405404 tggaaaaagctaaaacacacgacataaaatttcgtcaccattgcacgaatgagttgtatgttgtagttagagtac 27405330  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 5589763 - 5589833
Alignment:
Q  273 tggaaaaagctaaaacgcatgacataaaattttgtcaccattgcacgaatgagttgtatgttgtagttaga 343  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  5589763 tggaaaaagctaaaacgcacgacataaaatttcttcaccattgcacgaatgagttgtaagttgtagttaga 5589833  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 38919818 - 38919745
Alignment:
Q  274 ggaaaaagctaaaacgcatgacataaaattttgtcaccattgcacgaatgagttgtatgttgtagttagagtac 347  Q
    |||||||| ||||| ||| |||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||    
T  38919818 ggaaaaagataaaatgcacgacataaaatttcgtcaccattgcacgaatgaattgtatgtagtagttatagtac 38919745  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 18808843 - 18808758
Alignment:
Q  158 tttaaaataattaaagatttcaatacctaatgcaataaatgcat-aactttcctataatgttaccactttaagtgcttaaaaagca 242  Q
    ||||||| || |||||| ||||||  |||||||||||||||||| ||||||| || ||| |||||| |||| ||||||||| ||||    
T  18808843 tttaaaaaaagtaaagacttcaatttctaatgcaataaatgcataaactttcataaaatcttaccattttaggtgcttaaagagca 18808758  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 51291115 - 51291195
Alignment:
Q  158 tttaaaataattaaagatttcaatacctaatgcaataaatgca-taactttcctataatgttaccactttaagtgcttaaa 237  Q
    ||||||||||||||||| ||||||  | |||||||||||||||  ||||||| || ||| |||||| |||| |||||||||    
T  51291115 tttaaaataattaaagacttcaatttccaatgcaataaatgcacaaactttcataaaatcttaccattttaggtgcttaaa 51291195  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 17441515 - 17441578
Alignment:
Q  272 atggaaaaagctaaaacgcatgacataaaattttgtcaccattgcacgaatgagttgtatgttgt 336  Q
    |||||||||||||||  ||| |||| ||||||  ||||| |||||||||||||||| ||||||||    
T  17441515 atggaaaaagctaaagtgcacgacaaaaaattc-gtcactattgcacgaatgagttatatgttgt 17441578  T

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