View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20241_high_2 (Length: 354)
Name: NF20241_high_2
Description: NF20241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20241_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 35721899 - 35722228
Alignment:
| Q |
19 |
cataactactactagtactacttgcaccacctctattacaaatatgaatagccacatggcaattcaaactcctcttcaagttggtgatcacaaaagcatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35721899 |
cataactactactagtactacttgcaccacctctattacaaatatgaatagcaacatggcaattcaaactcctcttcaagttggtgatcacaaaagcatt |
35721998 |
T |
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| Q |
119 |
ccttcatctctatatcaagctctaattcatccaccatctttgcttctacaacagaatatgatgaataacttatcagaaaacaaagattttggtattggta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35721999 |
ccttcatctctatatcaagctctaattcatccaccatctttgcttctacaacagaatatgatgaataacttatcagaaaacaaagattttggtattggta |
35722098 |
T |
|
| Q |
219 |
atggtaatggtaatgttaatgttaatggcatgtttactagtactagttcaactttgcaccttcctcatcaaaatcaaaccatgctctttcccttttcaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35722099 |
atggtaatggtaatgttaatgttaatggcatgtttactagtactagttcaactttgcaccttcctcatcaaaatcaaaccatgctctttcccttttcaac |
35722198 |
T |
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| Q |
319 |
ctcaagctcttttgacacaactacttgttc |
348 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35722199 |
ctcaagctcttttgacacaactacttgttc |
35722228 |
T |
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