View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20241_high_3 (Length: 258)

Name: NF20241_high_3
Description: NF20241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20241_high_3
NF20241_high_3
[»] chr8 (1 HSPs)
chr8 (17-213)||(3649946-3650143)
[»] chr7 (1 HSPs)
chr7 (183-254)||(36352587-36352658)
[»] chr6 (1 HSPs)
chr6 (224-254)||(28883749-28883779)
[»] chr5 (1 HSPs)
chr5 (224-252)||(29463034-29463062)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 3649946 - 3650143
Alignment:
Q  17 aaagttgatgtttattttctcaagttcaacctggatttcgtgnnnnnnnnccttt-caaaatgaatatgtccacgatttactatatttttccgaaagaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  3649946 aaagttgatgtttattttctcaagttcaacctggatttcgtgtttttttttcttttcaaaatgaatatgtccacgctttactatatttttccaaaagaaa 3650045  T
Q  116 gactaggtgtgtactatttaagaccaaaaacaacataattttaatgcaaacctcgtataatgcaatggagaaatgatatttgtataaccaacttgtaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||    
T  3650046 gactaggtgtgtactatttaagaccaaaaacaacataattttaatgcaaacctcatataatgcaatagagaaatgatatttgtacaaccaatttgtaa 3650143  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 36352658 - 36352587
Alignment:
Q  183 gagaaatgatatttgtataaccaacttgtaacaannnnnnngacaactttctctctctcatactcacattat 254  Q
    |||||||||||| |||| |||||  |||||||||       ||||||||||||||||||||||| |||||||    
T  36352658 gagaaatgatatatgtacaaccattttgtaacaacttttgtgacaactttctctctctcatacttacattat 36352587  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 254
Target Start/End: Complemental strand, 28883779 - 28883749
Alignment:
Q  224 gacaactttctctctctcatactcacattat 254  Q
    |||||||||||||||||||||||||||||||    
T  28883779 gacaactttctctctctcatactcacattat 28883749  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 29463034 - 29463062
Alignment:
Q  224 gacaactttctctctctcatactcacatt 252  Q
    |||||||||||||||||||||||||||||    
T  29463034 gacaactttctctctctcatactcacatt 29463062  T

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