View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_high_10 (Length: 593)
Name: NF20242_high_10
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Original strand, 7080728 - 7081295
Alignment:
| Q |
8 |
ccaagaatattcatcatacataggaaccaaccacattgtgctatgtcaccacccctgaaacatttcaactaaattccaagtcactcttgttagcttatgc |
107 |
Q |
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| T |
7080728 |
ccaacaatattcatcatacataggaaccaaccacattgtgctatgtcaccacccctgaaatatttcaactaaattctaagtcactcttgttagcttatgc |
7080827 |
T |
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| Q |
108 |
tctcaaatttttgaccttgattccctaacatcggagaatcttgcagttatacaaatcaagacggtccaaatttaaagctcgataaataaaaagatacgtt |
207 |
Q |
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| T |
7080828 |
tctcaaatttttgacattgattccctaacatcggagaatcttgcacttatacaaatcaagacggtccaaatttaaagcttgataaataaaaagatacgtt |
7080927 |
T |
|
| Q |
208 |
gtaaatctcgatcaaaatcagatgatcgagattttcatgcattgactactttgaagcatttttccgacgacttgggctaaacgtttgaaacacaacacta |
307 |
Q |
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| T |
7080928 |
gtaaatcttgatcaaaatcagatgatcgagattttcatgcattgactactttgaagcatttttccgacgacgtggggtaaacgtttgaaacacaacacta |
7081027 |
T |
|
| Q |
308 |
cctattgcaggaaactgatccatagcacaactcctacatttcaacccaagaggctccaatgcaccagtaacctttctccaaacctcattgttatactcac |
407 |
Q |
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| T |
7081028 |
cctattgcaggaaactgatccatagcacaactcctacatttcaacccaagaggctccaatgcaccagtaacctttctccaaacctcattgttatactcac |
7081127 |
T |
|
| Q |
408 |
tacatgtcgttattgacaccgacattgtccctggtcggaaaatctgaacaaccttcctcaacatatgaacaatgttgtcatcattgtcgcttatggaccc |
507 |
Q |
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| T |
7081128 |
tacatgtcgttatcgacaccgacattgtccctggtcggaaaatctgaacaaccttcctcaacatatgaacaatgttgtcatcattgtcgcttatggaccc |
7081227 |
T |
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| Q |
508 |
cacacattcaaagcttgcatagctataaccatcttccggagtcacatgaatggtagaatagcattctc |
575 |
Q |
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| T |
7081228 |
cacacattcaaagcttgcatagctataaccatcttccggagtcacatgaatggtagaatagcattctc |
7081295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 503 - 567
Target Start/End: Complemental strand, 49020594 - 49020530
Alignment:
| Q |
503 |
gaccccacacattcaaagcttgcatagctataaccatcttccggagtcacatgaatggtagaata |
567 |
Q |
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| T |
49020594 |
gacccaacacattcaaagcttgcatagctgaaaccatcttctggtgtaacatgaatggtggaata |
49020530 |
T |
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