View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_high_13 (Length: 525)
Name: NF20242_high_13
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 505
Target Start/End: Complemental strand, 35400681 - 35400171
Alignment:
| Q |
13 |
agcataggcaatggaggtgggggagatggcagaggaatttgagcagtggtcactggtggagctagacgcagtagtaaatccctgtggtatttctgtgaac |
112 |
Q |
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| T |
35400681 |
agcataggcaatggaggtgggggagatggcagaggaatttgagcagtggtcactggtggagctagacgcagtagtaaatccctgtggtatttctgtgaac |
35400582 |
T |
|
| Q |
113 |
accccccnnnnnnngaagctacaataagcaaaggagagaggaaagtgaccatgaaagtaaatgagcaatgaacaaggtttagataaataatttaccctca |
212 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35400581 |
acaccccaaaaaaagaagctacaataagcaaaggagagaggaaagtgaccatgaaagtaaatgagcaatgaacaaggtttagataaataatttaccctta |
35400482 |
T |
|
| Q |
213 |
agagaaacaataataaccatcg-acaaaagaggtttcaagaaaattcttaaccacattggtcacagtgcaactttcataacacgtaattgaagttgtgaa |
311 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35400481 |
agagaaacaataataaccatcggacaaaagaggtttcaagaaaattcttaaccacattggtcacagtgcaactttcataacacgtaattgaagttgtgaa |
35400382 |
T |
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| Q |
312 |
ctaaaacagataccaattctatgatcataatgctggaaaatgtcaaaaaagtgat------------------tatagccagatatacaaacaagataaa |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35400381 |
ctaaaacagataccaattctatgatcataatgctggaaaatgtcaaaaaagtgattatactaccaaaagttattatagccagatatacaaacaagataaa |
35400282 |
T |
|
| Q |
394 |
atagttacctgaattacaaagttccgcctttcacaatccaagaaacatattgaaatgaaaatctacccgtgacaaaattttgtccctgacagttgaaaaa |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35400281 |
atagttacctgaattacaaagttccgcctttcacaatccaag-aacatattgaaatgaaaatctacccgtgacaaaattttgtccctgacagttgaaaaa |
35400183 |
T |
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| Q |
494 |
ctaagctggtcc |
505 |
Q |
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|||||||||||| |
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| T |
35400182 |
ctaagctggtcc |
35400171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 398 - 505
Target Start/End: Original strand, 3726669 - 3726775
Alignment:
| Q |
398 |
ttacctgaattacaaagttccgcctttcacaatccaagaaacatattgaaatgaaaatctacccgtgacaaaattttgtccctgacagttgaaaaactaa |
497 |
Q |
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||||||||| ||||||||| |||||||||||||||||||| ||| || ||||||||||| ||| ||||||| |||||||| ||||||||||||||||| |
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| T |
3726669 |
ttacctgaactacaaagttgcgcctttcacaatccaagaa-catgttaaaatgaaaatccaccttcgacaaaaatttgtcccggacagttgaaaaactaa |
3726767 |
T |
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| Q |
498 |
gctggtcc |
505 |
Q |
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||||||| |
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| T |
3726768 |
tctggtcc |
3726775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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