View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20242_high_24 (Length: 374)
Name: NF20242_high_24
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 11294991 - 11294648
Alignment:
| Q |
17 |
actaccaaattttaagtg--agtttggccactaagtttttagaacaaaagaaaattcaaccatgttacatatctactattaaatttctaatacagtagat |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
11294991 |
actaccaaattttaagtgtgagtttggccactaagcttttagaacaaaagaaaattcaaccatgttacatatctactattaaatttctaatacaatggat |
11294892 |
T |
|
| Q |
115 |
acat-ttgttgcgttatacaaaaacataaaatttataaaagagaaagaaagtcttgtatggtcacaaatatttgagaacatagtttgaacacacgaaaag |
213 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
11294891 |
acatattgtcgcgttatacaaaaacataaaatttataaaagagaaagaaagtcttatatggtcacaaatatttgggcacatagtttgaacacacaaaaag |
11294792 |
T |
|
| Q |
214 |
agaagcagaatgtatggtgagttgatgtaccgtatatacatggtaatcaagctaacaaagcatgatcacataaatggatccatccatgggattctttgtt |
313 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11294791 |
agaagcagaatgcatggtgagttggtgtaccggatatacatggtaatcaagctaacaatgcatgatcacataaatggatccatccatgggattctttgtt |
11294692 |
T |
|
| Q |
314 |
atcaaaggaatatgttcttcccttttgattccttttgtaaagta |
357 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11294691 |
atcaaaggaatatgtccttcccttttgattccttttgtaaagta |
11294648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University