View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_high_3 (Length: 770)
Name: NF20242_high_3
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 26128 - 25803
Alignment:
| Q |
19 |
cttttatggtacaaggatagattcgcttgttgcttctgatgtaaaagttcccgtcttgtttattttaggggacaatgacccaatttgtgctgtaagtgaa |
118 |
Q |
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| T |
26128 |
cttttatggtacaaggatagattcgcttgttgcttctgatgtaaaagttcccgtcttgtttattttaggggacaatgacccaatttgtgctgtaagtgaa |
26029 |
T |
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| Q |
119 |
ataaaaaatattcagactacaattgatagtggctccaaagtagtgatattccctggtagaggtcatggatttgcccaccgacctgaatctgtggaagaag |
218 |
Q |
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| T |
26028 |
ataaaaaatattcagactacaattgatagtggctccaaagtagtgatattccctggtagaggtcatggatttgcccaccgacctgaatctgtggaagaag |
25929 |
T |
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| Q |
219 |
acaaggatgctgaacaagcctacgtaattatgagagactggatacatgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtct |
318 |
Q |
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| T |
25928 |
acaaggatgctgaacaagcctacgtaattatgagagactggatacatgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtc- |
25830 |
T |
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| Q |
319 |
aacacttgcgttttaacatgcatatga |
345 |
Q |
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| T |
25829 |
agcacttgcgttttaacatgcatatga |
25803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 4e-71; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 535 - 757
Target Start/End: Original strand, 18097214 - 18097438
Alignment:
| Q |
535 |
agggaaaataaaaagtacttgttttatattaatattaattaaattaccttctctccnnnnnnnnnnnt--tttaattaaattatcactacaatnnnnnnn |
632 |
Q |
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| T |
18097214 |
agggaaaataaaaagtagttgttttatattaatattgattaaattaccttctctcaaaaaaaaaattaaattaaattaaattatcactacaataaaaaaa |
18097313 |
T |
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| Q |
633 |
ncacaatttactgaaacccttttactcctcctctgtcaatgtcatcatctactaatcgtccatggcagtttcatgggtgagaagtagcttcagttcatca |
732 |
Q |
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| T |
18097314 |
acacaatttactgaaacccttttactcctcctctgtcaatgtcatcatctactaatcgtccatggcagtttcatgggtgagaagtagcttcagttcatca |
18097413 |
T |
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| Q |
733 |
tattcgtttcttagtgatctctgct |
757 |
Q |
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| T |
18097414 |
tattcgtttcttagtgatctctgct |
18097438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 479 - 526
Target Start/End: Original strand, 18097009 - 18097056
Alignment:
| Q |
479 |
aggggtttggtagatccatgttatatttatttttataaatggatagta |
526 |
Q |
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| T |
18097009 |
aggggtttggtagatccatgttatatttatttttataaatggatagta |
18097056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 443
Target Start/End: Original strand, 18096939 - 18096973
Alignment:
| Q |
409 |
ataattttattcccattcccaaaataaaccgctag |
443 |
Q |
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| T |
18096939 |
ataattttattcccattcccaaaataaatcgctag |
18096973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 166 - 345
Target Start/End: Complemental strand, 21352585 - 21352405
Alignment:
| Q |
166 |
attccctggtagaggtcatggatttgcccaccgacctgaatctgtggaagaagaca--aggatgctgaacaagcctacgtaattatgagagactggatac |
263 |
Q |
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| T |
21352585 |
attccctgatagaggtcacggatttgcccaccgatccggatctctgaacgaagacgcgaggatgctgaacaagcttatgtaattatgagagactggatat |
21352486 |
T |
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| Q |
264 |
atgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtctaacacttgcgttttaacatgcatatga |
345 |
Q |
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| T |
21352485 |
ttgaacatttggtgtaaaaatgaaatgttttaagactatatgaataaaggtatc-aacacttgcgtcttaacatgcatatga |
21352405 |
T |
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