View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_high_30 (Length: 333)
Name: NF20242_high_30
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 27416114 - 27415809
Alignment:
| Q |
10 |
aagaaaatgcgtgtgctcaattcctgctttgaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttg |
109 |
Q |
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| T |
27416114 |
aagaatatgtgtgtgctcaattcctgctttgaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttg |
27416015 |
T |
|
| Q |
110 |
taagttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatt |
209 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27416014 |
taagttctgaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatt |
27415915 |
T |
|
| Q |
210 |
tcaatctaatggtcttttttcccatctttacaatttgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctcttttttgtg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27415914 |
tcaatctaatggtcttttttcccatctttacaatttgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctcttttttgtg |
27415815 |
T |
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| Q |
310 |
ttagat |
315 |
Q |
| |
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|||||| |
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| T |
27415814 |
ttagat |
27415809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 304
Target Start/End: Complemental strand, 27413115 - 27412862
Alignment:
| Q |
47 |
ttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaagtagagga |
146 |
Q |
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| T |
27413115 |
ttcagaataccaagtcattttttaa-ttatagcaagcaatattactcatatagtcctatttcttaagtttctaagtgcaataaaccaaaaacatagaaga |
27413017 |
T |
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| Q |
147 |
gctgcttgagtagtcgaattcgttttcacta-aacaaaataatatatacgctatataaagaatttcaatctaatggtc-ttttttcccatctttacaatt |
244 |
Q |
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| | ||||| |||||||||||||||||| || ||||||| ||||| || | ||||| | |||||||||| ||| |||||||||||||||||||| |
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| T |
27413016 |
gttacttgaatagtcgaattcgttttcattataacaaaa-aatatttatattccataaa-tttgtcaatctaatagtcactttttcccatctttacaatt |
27412919 |
T |
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| Q |
245 |
tgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctctttt |
304 |
Q |
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| || | | |||||||||||||||| | || ||||||||||||||||||| |||||| |
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| T |
27412918 |
tcattagatgcctagtttacaaaaaaatgtc---tctactaaactatgtcagtttctttt |
27412862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 27490232 - 27490160
Alignment:
| Q |
234 |
tctttacaatttgataacaggcctag----tttacaaaaatgtctctagtctactaaactatgtcagtctctt |
302 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27490232 |
tctttacaatttgataacattcctacgtactttacaaaaatgtctctagtctactaaactatgtcagtctctt |
27490160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 302
Target Start/End: Original strand, 27569734 - 27569989
Alignment:
| Q |
40 |
gaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaag |
139 |
Q |
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| T |
27569734 |
gaaatttctcaggataccaagtccctttttttcttatagcaagcaatgttacttatataatcatatgcagtatgttcttaagtgcaataaaccaaaaaca |
27569833 |
T |
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| Q |
140 |
tagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatttcaatctaatggtc-ttttttcccatcttt |
238 |
Q |
| |
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||||||| | |||||||||||||||| || ||| ||||||| ||||||| | | |||||| | |||||||||||||| ||||||| ||||||| |
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| T |
27569834 |
gagaggagatatttgagtagtcgaattcattgtcattaaacaa---aatatatttgttctataaa-tttctcaatctaatggtcattttttctcatcttt |
27569929 |
T |
|
| Q |
239 |
acaatttgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctctt |
302 |
Q |
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| T |
27569930 |
acaatttgttaagatg-cgagtttacaaaaaaatatc---actactaaactatgtcagtctctt |
27569989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 27423642 - 27423546
Alignment:
| Q |
71 |
tcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattc |
167 |
Q |
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|||||||||||||| |||||||||||| || |||| |||||| ||||||||||||||||||||| | ||||| || |||||||||||||||| |
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| T |
27423642 |
tcttatagcaagcaacattactcatatagtcatatttcataagtttttaagtgcaataaaccaaaaacacaaaggagatgtttgagtagtcgaattc |
27423546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 27565711 - 27565857
Alignment:
| Q |
114 |
ttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatttcaa |
213 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||||||| ||||||||||| || || |||||||||| |||||| | || |||| |
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| T |
27565711 |
ttcttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattcattgtcgttaaacaaaat-tgatatacaattta---------tcaa |
27565800 |
T |
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| Q |
214 |
tctaatggtc-ttttttcccatctttacaatttgataacaggcctagtttacaaaaa |
269 |
Q |
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|||||||||| |||||| ||||||||||||||||||| | |||||||||||||||| |
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| T |
27565801 |
tctaatggtcatttttttgcatctttacaatttgataagatgcctagtttacaaaaa |
27565857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 27426187 - 27426120
Alignment:
| Q |
117 |
ttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaa |
184 |
Q |
| |
|
|||||||| |||||||||||| ||| | |||||||||||||||| |||||| || ||| ||||||||| |
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| T |
27426187 |
ttaagtgcgataaaccaaaaacgtaaaagagctgcttgagtagttgaattcattctcattaaacaaaa |
27426120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 27420748 - 27420676
Alignment:
| Q |
119 |
aagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatata |
193 |
Q |
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||||||||||||| ||| | ||||||| | ||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
27420748 |
aagtgcaataaacataaaca-tagaggatcagcttgagtagtcgaattcgttttcattaaacaaaa-aatatata |
27420676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 27497181 - 27497263
Alignment:
| Q |
226 |
ttttcccatctttacaatttgataacaggcctagtttacaaaaatgt-----ctctagtctactaaactatgtcagtctcttt |
303 |
Q |
| |
|
|||||||||| || ||||||||| | | ||||||| ||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
27497181 |
ttttcccatcattgcaatttgattagatgcctagtatacaaaaatgtctctactctagtctactaaactacgtcagtctcttt |
27497263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 1754955 - 1754907
Alignment:
| Q |
227 |
tttcccatctttacaatttgataacaggcctagtttacaaaaatgtctc |
275 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
1754955 |
tttcccatctttacaatttgataagatacctagtttacaaaaatgtctc |
1754907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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