View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20242_high_41 (Length: 302)
Name: NF20242_high_41
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_41 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 39959409 - 39959141
Alignment:
| Q |
13 |
aatattgaaggtttaaatagttgcattattagaataaatattataagagcccaaaagaatgatcacaattttaggatggagttaagttataccaaccaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39959409 |
aatattgaaggtttaaatagttgcattattagaataaatattataagagcccaaaagaatgatcacaattttaggatggagttaagttataccaaccaca |
39959310 |
T |
|
| Q |
113 |
ccataatttgctgttttttgcattattcttcctaactcttactaactttgcctcatatcaattacctccccagcagatatctcatggtgtatataattat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39959309 |
ccataatttgctgttttttgcattattcttcctaactcttactaactttgcctcatatcaattacctccccagcagatatctcatggtgtatataattat |
39959210 |
T |
|
| Q |
213 |
tactattttcattccattattacctacctacctacctacactatcttactcatattgtacagatacttgttcc |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39959209 |
tactattttcattccattattacctacctac----ctacactatcttactcatattgtacagatacttgttcc |
39959141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University