View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_high_49 (Length: 256)
Name: NF20242_high_49
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_49 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 8337646 - 8337874
Alignment:
| Q |
12 |
atgaacacaagttggaaaaaacagatctgtaaaccatgtgaatttaagaaacaataagttatgactgaaaaaatggaagaacataaatcttcttactttt |
111 |
Q |
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| T |
8337646 |
atgaacacaaattggaaaaaacagatctggaaaccatgtaaatttaagaaacaataagttatgactgaaaaaatggaagaacataaatcttcttactttt |
8337745 |
T |
|
| Q |
112 |
gtgatgtttaaaagcattagttaatgacatttaccagtaaatgaaagagggtaggaatgataaagagggaagaagtgaaaatgaaaagcagtttctcacc |
211 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8337746 |
gtgatgtttaaaagcattagttaatgacgtttagcagtaaatgaaagagggtaggaatgataaagagagaagaagtgaaaatgaaaagcagtttctcacc |
8337845 |
T |
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| Q |
212 |
agtgtttgagagagggaacaaatggttgt |
240 |
Q |
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| T |
8337846 |
agtgtttgagagagggaacgaatggttgt |
8337874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 10234928 - 10235154
Alignment:
| Q |
15 |
aacacaagttggaaaaaacagatctgtaaaccatgtgaattt-aagaaacaataagttatgactgaaaaaatggaagaacataaatcttcttacttttgt |
113 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10234928 |
aacacaagttggaaaaaacagatctggaaaccatgtgatttttaagaaacaataagttatgactgaaaaaatggaagaacataaatcttcttacttttgt |
10235027 |
T |
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| Q |
114 |
gatgtttaaaagcattagttaatgacatttaccagtaaatgaaagagggtaggaatgataaagagggaagaagtgaaaatgaaaagcagtttctcaccag |
213 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10235028 |
gatgtttaaaagcattagttaatgatgtttaccagtaaatgaaagagggtaggaatgataaagagggaagaagtgaaaatgaaaagcagtttctcaccgg |
10235127 |
T |
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| Q |
214 |
tgtttgagagagggaacaaatggttgt |
240 |
Q |
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||||||||||||||||| |||||||| |
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| T |
10235128 |
tgtttgagagagggaacggatggttgt |
10235154 |
T |
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Back To:
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