View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_high_51 (Length: 250)
Name: NF20242_high_51
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_51 |
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| [»] scaffold0566 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 6077794 - 6077572
Alignment:
| Q |
10 |
tgagaagaaaaacaatagaactggtcaatcctcaattctcatttgcaattgtcaattagaaagagagagaaactgccataaatcaccctattatatgtac |
109 |
Q |
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| T |
6077794 |
tgagaagaaaaacaatagaactggtcaatcctcaattctcatttgcaattgtcaaatagaaagagagagaaactgccataaatcaccctattatatgtac |
6077695 |
T |
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| Q |
110 |
ttcattgataaatgtagcaagtataaaaaagctgatgattccttnnnnnnnnctgatgattgaaataaaatcgtcattgttttattttgagatagaaatt |
209 |
Q |
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|||| ||||||||||| |||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6077694 |
ttcaatgataaatgtaacaagtataaaaaagttgatgattccttaaaaaaaactaatgattgaaataaaatcgtcattgttttattttgagatagaaatt |
6077595 |
T |
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| Q |
210 |
gagagagataatataagagaatt |
232 |
Q |
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||||||||||||||||||||||| |
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| T |
6077594 |
gagagagataatataagagaatt |
6077572 |
T |
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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 27273115 - 27273203
Alignment:
| Q |
10 |
tgagaagaaaaacaatagaactggtcaatcctcaattctcatttgcaattgtcaattagaaagagagagaaactgccataaatcaccct |
98 |
Q |
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| T |
27273115 |
tgagaagaaaaacaatagagccgctcaatcctcaattctcattagcaattgtaaaatagaaagagagtgaaactgccataaatcaccct |
27273203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 13550380 - 13550462
Alignment:
| Q |
18 |
aaaacaatagaactggtcaatcctcaattctcatttgcaattgtcaattagaa--agagagagaaactgccataaatcaccct |
98 |
Q |
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| T |
13550380 |
aaaacaatagaacccctcaatcctcaattctcattagcaattttccaatagaaagagagagagaaactgtcataaatcaccct |
13550462 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 43651704 - 43651750
Alignment:
| Q |
14 |
aagaaaaacaatagaactggtcaatcctcaattctcatttgcaattg |
60 |
Q |
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| T |
43651704 |
aagaaaaacaatagaactgttcaatcctcaattctcattagcaattg |
43651750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 21114913 - 21114959
Alignment:
| Q |
14 |
aagaaaaacaatagaactggtcaatcctcaattctcatttgcaattg |
60 |
Q |
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| T |
21114913 |
aagaaaaacaatagaactgttcaatcctcaattctcattagcaattg |
21114959 |
T |
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Target: scaffold0566 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 8311 - 8273
Alignment:
| Q |
101 |
tatatgtacttcattgataaatgtagcaagtataaaaaa |
139 |
Q |
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| T |
8311 |
tatatgtacttcaatgataaatgtagcaagtatgaaaaa |
8273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 7807628 - 7807676
Alignment:
| Q |
10 |
tgagaagaaaaacaatagaactggtcaatcctcaattctcatttgcaat |
58 |
Q |
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| T |
7807628 |
tgagaagaaaaacaatagtaccgctcaatcctcaattcttattagcaat |
7807676 |
T |
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