View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_high_6 (Length: 636)
Name: NF20242_high_6
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 530; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 13 - 617
Target Start/End: Original strand, 37765370 - 37765983
Alignment:
| Q |
13 |
cacagagcaatgaaaattctaaacaagtttccatgaggattggaataatgattttatgatttaaggaaagaaataatacttggtacggataaccttgaca |
112 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37765370 |
cacagagcaattaaaattctaaacaagtttccatgaggattggaataatgattttatgatttaaggaaagaaataatacttggtacggataaccttgaca |
37765469 |
T |
|
| Q |
113 |
tcagttatttctcctttcttagaaaattcttttcttagtccatcctccctaacatgtttagggatattcttcacacatatcctcgacctgaaatcacaac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37765470 |
tcagttatttctcctttcttagaaaattcttttcttagtccatcctccctaacatgtttagggatattcttcacacatatcctcgacctgaaaacacaac |
37765569 |
T |
|
| Q |
213 |
cacagccaaatcatttcgcatattttggttttgactcggagtgttttcgttatattaagacagaatgtgacatttgcacttacatggcaccttaatagta |
312 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37765570 |
cacaaccaaatcatttcgcatattttggttttgactcggagtgttttcgttatattaagacagaatgtgacatttgcacttacatggcaccttaatagta |
37765669 |
T |
|
| Q |
313 |
gacaatgctggcaatggaatcgtctgagacaaattaaacactcaattattatacaatgcatatctattataaagaattttcattggtgtaaat------- |
405 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||| |
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| T |
37765670 |
gacaaagctggcaatggaatcgtctgagacaaattaaacactcaattattatacaatacatatttattataaagaattttcattgatataaatatccttt |
37765769 |
T |
|
| Q |
406 |
--tcgcgttaatcatatagctatagtgatatgtgttgattgaactatttccttttatttatcattaaaaagaacagcaccataatttaaaaatttatagc |
503 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37765770 |
tctaacattaatcatatagctatagtgatatgtgttgattgaactatttacttttatttatcattaaaaagaacagcaccataatttaaaaatttatagc |
37765869 |
T |
|
| Q |
504 |
ataagcgcttattcatataagtgcttatgaacagtttcgattccagacacaagaaaataagtagatgagaagaacttacctcttcggtgcagctatgaaa |
603 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37765870 |
ataagcgcttattcatataagtgcttatgatcagtttcgattccagacacaagaaaataagtagatgagaagaacttacctcttcggtgcagctatgaaa |
37765969 |
T |
|
| Q |
604 |
ttcgcgtggctagg |
617 |
Q |
| |
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|||||||||||||| |
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| T |
37765970 |
ttcgcgtggctagg |
37765983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 25 - 300
Target Start/End: Complemental strand, 38600825 - 38600551
Alignment:
| Q |
25 |
aaaattctaaacaagtttccatgaggattggaataatgattttatgatttaaggaaagaaataatacttggtacggataaccttgacatcagttatttct |
124 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||| |||| ||||||||||||||||||| |
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| T |
38600825 |
aaaattctaagtaagtgtccatgaggattggaataaggatttta-gatttaaggaaagaaacaatacatggtacgcataagcttgacatcagttatttct |
38600727 |
T |
|
| Q |
125 |
cctttcttagaaaattcttttcttagtccatcctccctaacatgtttagggatattcttcacacatatcctcgacctgaaatcacaaccacagccaaatc |
224 |
Q |
| |
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||| |||||||||||| | |||||| ||||||| || || |||||||||| ||||||||||||| ||||||||| || |||| ||| | |||||| |
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| T |
38600726 |
cctatcttagaaaattttagtcttagatgatcctccgtataatatttagggatactcttcacacatattctcgacctggaaacacacccataaacaaatc |
38600627 |
T |
|
| Q |
225 |
atttcgcatattttggttttgactcggagtgttttcgttatattaagacagaatgtgacatttgcacttacatggc |
300 |
Q |
| |
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||| ||||||||| ||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38600626 |
gtttagcatattttagttctgaatcagagtgttttcgttatattaagacagaatgccacatttgcacttacatggc |
38600551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 37560380 - 37560185
Alignment:
| Q |
16 |
agagcaatgaaaattctaaacaagtttccatgaggattggaataatgattttatgatttaaggaaagaaataatacttggtacggataaccttgacatca |
115 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| |||||||||| |
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| T |
37560380 |
agagcagttaaaattctaaacaagtttccatgaggattggaataaggattttatgatttaaggaaagaaacaatacttggtacgcataagcttgacatca |
37560281 |
T |
|
| Q |
116 |
gttatttctcctttcttagaaaattcttttcttagtccatcctccctaacatgtttagggatattcttcacacatatcctcgacctgaaatcacaa |
211 |
Q |
| |
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|||||||||||||||| |||||||| | ||| |||| ||| ||| |||||| |||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
37560280 |
gttatttctcctttctgagaaaattgtgctctcagtcgatcttccgtaacatatttagggagattcttcacacatatcctcgacctggaaacacaa |
37560185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 37744203 - 37744389
Alignment:
| Q |
25 |
aaaattctaaacaagtttccatgaggattggaataatgattttatgatttaaggaaagaaataatacttggtacggataaccttgacatcagttatttct |
124 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| |||||||||| || |||||||||| ||||||| ||||| |||| ||||||||||||||||||| |
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|
| T |
37744203 |
aaaattcaaaacaagtgtccatgaggattggaataaagattttatgactttaggaaagaaacaatactttgtacgcataagcttgacatcagttatttct |
37744302 |
T |
|
| Q |
125 |
cctttcttagaaaattcttttcttagtccatcctccctaacatgtttagggatattcttcacacatatcctcgacctgaaatcacaa |
211 |
Q |
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|||||| |||||||||||| | |||||| |||||| ||||| |||||||| ||||||||| |||||||| |||||| || ||||| |
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| T |
37744303 |
cctttcctagaaaattcttgttttagtcgatcctctgcaacatatttagggagattcttcacgcatatcctggacctggaaacacaa |
37744389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 563
Target Start/End: Complemental strand, 38600434 - 38600391
Alignment:
| Q |
520 |
ataagtgcttatgaacagtttcgattccagacacaagaaaataa |
563 |
Q |
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||||| |||||||||||||| ||||||||||||||| ||||||| |
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| T |
38600434 |
ataagcgcttatgaacagttccgattccagacacaacaaaataa |
38600391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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