View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_high_63 (Length: 237)
Name: NF20242_high_63
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_63 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43532701 - 43532921
Alignment:
| Q |
1 |
agagtgaaaacaaatacctcagctataccatgtagcatctggactattctcaaggctgttgtagaatccaaaccagatgttggttcatcaagaaacagaa |
100 |
Q |
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| T |
43532701 |
agagtgaaaacaaatacctcagctatatcatgtagcatctggactattctcaaggctgttgtagaatccaaaccagatgttggttcatcaagaaacagaa |
43532800 |
T |
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| Q |
101 |
gagaaggattgattataatctcatttccaatacaaactctcttcctctctccaccagatactcctcggacaaaggaacctcctatcatagtgtcttggca |
200 |
Q |
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| T |
43532801 |
gagaaggattgattataatctcatttccaatacaaactctcttcctctctccaccagatactcctcggacaaaggaacctcctatcatagtgtcttggca |
43532900 |
T |
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| Q |
201 |
cctatttccatgcatgattat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
43532901 |
cctatttccatgcatgattat |
43532921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 24126763 - 24126561
Alignment:
| Q |
13 |
aatacctcagctataccatgtagcatctggactattctcaaggctgttgtagaatccaaaccagatgttggttcatcaagaaacagaagagaaggattga |
112 |
Q |
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| T |
24126763 |
aatacctctgctatgtcttgcagcatctgaacgatcttcaaggcggttgtcgaatccaaaccagatgttggttcatcaagaaacagaatggaaggattga |
24126664 |
T |
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| Q |
113 |
ttataatctcatttccaatacaaactctcttcctctctccaccagatactcctcggacaaaggaacctcctatcatagtgtcttggcacctatttccatg |
212 |
Q |
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| T |
24126663 |
ttataatctcattaccaatacaaactctcttcctctctccaccggatactccacgaacaaatgaaccaccgatcatagtatcttggcacctgttttcatg |
24126564 |
T |
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| Q |
213 |
cat |
215 |
Q |
| |
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||| |
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| T |
24126563 |
cat |
24126561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 24144944 - 24144787
Alignment:
| Q |
58 |
gttgtagaatccaaaccagatgttggttcatcaagaaacagaagagaaggattgattataatctcatttccaatacaaactctcttcctctctccaccag |
157 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
24144944 |
gttgttgaatccaaaccagatgttggttcatcaagaaacagaatggaaggattgattatgatctcattgccaatacaaactctcttcctctctccaccag |
24144845 |
T |
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| Q |
158 |
atactcctcggacaaaggaacctcctatcatagtgtcttggcacctatttccatgcat |
215 |
Q |
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| T |
24144844 |
ataatccgggaacaaacgaatcaccaatcatagtattttggcacctgttttcatgcat |
24144787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 33718680 - 33718638
Alignment:
| Q |
55 |
gctgttgtagaatccaaaccagatgttggttcatcaagaaaca |
97 |
Q |
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| T |
33718680 |
gctgtagtagaatccaaaccagaagttggttcatcaagaaaca |
33718638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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