View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_high_68 (Length: 227)
Name: NF20242_high_68
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_68 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 49273367 - 49273140
Alignment:
| Q |
1 |
aggactctataacaagaagaagtatcatactttgcatcagaaacaatctgactagtgcctgaagtgttgcataagaaaatagagcaggaatcatgcacat |
100 |
Q |
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| T |
49273367 |
aggactctataacaagaagaagtatcatactttgcatcagaaacaatctgactagtgcctgaagtgttgcataagaaaatagagcaggaatcatgcccat |
49273268 |
T |
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| Q |
101 |
aacatattttcaggtgacac-ttcttttactaaacaaaccatgatcacatattaattgtgatgcaccaagtctaagtcttttttacggcctgacatgtat |
199 |
Q |
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| T |
49273267 |
aacatattttcaggtgacactttcttttactaaacaaaccatgatcacatattaattgtgatgcaccaagtctaagtcttttttacggcctgacatgtat |
49273168 |
T |
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| Q |
200 |
ctagacacttttttgctttatgttggcc |
227 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
49273167 |
ctagacacttttttgctttatgttggcc |
49273140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 49268336 - 49268244
Alignment:
| Q |
8 |
tataacaagaagaagtatcatactttgcatcagaaacaatctgactagtgcctgaagtgttgcataagaaaatagagcaggaatcatgcacat |
100 |
Q |
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| T |
49268336 |
tataacaagaggaagtatcaaactttgcatcagaaagtatctgaccagtgcctgaagcgttgcataagcaaatagagcaggaatcatgcacat |
49268244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 49274020 - 49274122
Alignment:
| Q |
7 |
ctataacaagaagaagtatcatactttgcatcagaaacaatctgactagtgcctgaagtgttgcataagaaaatagagcaggaatcatgcacataacata |
106 |
Q |
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| T |
49274020 |
ctataacaacaggaaatatcaaactttgcatcagaaagtatcggacccgtgcctgaagtgttgcataagcaaatagagcaggaatcatgcacatagcata |
49274119 |
T |
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| Q |
107 |
ttt |
109 |
Q |
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||| |
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| T |
49274120 |
ttt |
49274122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 49255612 - 49255509
Alignment:
| Q |
8 |
tataacaagaagaagtatcatactttgcatcagaaacaatctgactagtgcctgaagtgttgcataagaaaatagagcaggaatcatgcacataacatat |
107 |
Q |
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|||||||||| |||| | || ||||||||| ||||| ||||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||| || || |
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| T |
49255612 |
tataacaagaggaagaaccaaactttgcataagaaagtatctgaccagtgcctgaagagttgcataagcaaaaagagcaggaatcatgcacatagcaaat |
49255513 |
T |
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| Q |
108 |
tttc |
111 |
Q |
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|||| |
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| T |
49255512 |
tttc |
49255509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 29356859 - 29356756
Alignment:
| Q |
8 |
tataacaagaagaagtatcatactttgcatcagaaacaatctgactagtgcctgaagtgttgcataagaaaatagagcaggaatcatgcacataacatat |
107 |
Q |
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|||||||||| ||| ||||| ||||||||||||||| || |||| | || | || | |||||||||| ||||||||||||||||||||||||| || || |
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| T |
29356859 |
tataacaagatgaactatcaaactttgcatcagaaagtatatgaccattggccgaggagttgcataagcaaatagagcaggaatcatgcacatagcaaat |
29356760 |
T |
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| Q |
108 |
tttc |
111 |
Q |
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|||| |
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| T |
29356759 |
tttc |
29356756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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