View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_high_69 (Length: 226)
Name: NF20242_high_69
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_69 |
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Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 5018294 - 5018219
Alignment:
| Q |
104 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggtt-caaagtaaatttagtcatca |
178 |
Q |
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| T |
5018294 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggttccaaagtaaatttagtcatca |
5018219 |
T |
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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 23165603 - 23165678
Alignment:
| Q |
104 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggtt-caaagtaaatttagtcatca |
178 |
Q |
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| T |
23165603 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggttccaaagtaaatttagtcatca |
23165678 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 23165506 - 23165546
Alignment:
| Q |
7 |
aggagaagcaaaggcagaagagcctcaacatcatcttctgg |
47 |
Q |
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| T |
23165506 |
aggagaagcagtggcagaatagcctcaacatcatcttctgg |
23165546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 9814214 - 9814292
Alignment:
| Q |
104 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggtt-caaagtaaatttagtcatcacag |
181 |
Q |
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| T |
9814214 |
gtacaagtcatttctcacttgctaacaagtgactatttgtgatttttgtagggttccaaagtaaatttagtcatcacag |
9814292 |
T |
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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 42663543 - 42663617
Alignment:
| Q |
104 |
gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggtt-caaagtaaatttagtcatca |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
42663543 |
gtacaagtcatttctcacttgctaacaagtgactatttgtgg-ttttgtagggttccaaagtaaatttagtcatca |
42663617 |
T |
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