View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20242_high_7 (Length: 630)

Name: NF20242_high_7
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20242_high_7
NF20242_high_7
[»] chr1 (11 HSPs)
chr1 (72-615)||(36989107-36989657)
chr1 (274-615)||(12804529-12804870)
chr1 (255-455)||(28496105-28496305)
chr1 (256-480)||(12774839-12775063)
chr1 (255-491)||(31644057-31644293)
chr1 (256-613)||(4160143-4160503)
chr1 (256-615)||(50788819-50789178)
chr1 (256-422)||(42287077-42287243)
chr1 (514-614)||(28496367-28496467)
chr1 (506-615)||(12774704-12774813)
chr1 (506-572)||(42286927-42286993)
[»] chr8 (3 HSPs)
chr8 (257-611)||(33186506-33186860)
chr8 (256-606)||(5788723-5789073)
chr8 (549-614)||(3271561-3271626)
[»] chr2 (5 HSPs)
chr2 (255-614)||(42898066-42898425)
chr2 (256-614)||(38895857-38896215)
chr2 (315-407)||(40040764-40040856)
chr2 (502-614)||(5435662-5435774)
chr2 (547-614)||(17858968-17859035)
[»] chr4 (2 HSPs)
chr4 (256-614)||(30518148-30518506)
chr4 (255-394)||(22085505-22085644)
[»] chr7 (3 HSPs)
chr7 (256-615)||(44150800-44151159)
chr7 (274-394)||(40749378-40749498)
chr7 (504-615)||(40749157-40749268)
[»] chr3 (3 HSPs)
chr3 (361-473)||(52248460-52248572)
chr3 (466-614)||(12105878-12106027)
chr3 (466-614)||(46987920-46988069)
[»] chr5 (2 HSPs)
chr5 (547-614)||(12938268-12938335)
chr5 (547-614)||(12952417-12952484)


Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 72 - 615
Target Start/End: Complemental strand, 36989657 - 36989107
Alignment:
Q  72 tagttcatagggtatgtggtcaaagcttagtctatcttattcttagctgccaaaacggcacgcacacactttatttattattattagtaaacgacagcta 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989657 tagttcatagggtatgtggtcaaagcttagtctatcttattcttagctgccaaaacggcacgcacacactttatttattattattagtaaacgacagcta 36989558  T
Q  172 gtgcatgaaagttgaactggtggaagaaactaagaaagaaacactgttcaaaagtcaaattaaaccacaagtttttt-------attcacatacctggaa 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  36989557 gtgcatgaaagttgaactggtggaagaaactaagaaagaaacactgttcaaaagtcaaattaaaccacaagtttttttttttttattcacatacctggaa 36989458  T
Q  265 aagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaacacttatcac 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989457 aagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaacacttatcac 36989358  T
Q  365 atttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacacatgaaggttc 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989357 atttccactttttctcaccatgctttctacaaaagtgctttttaattccagtaagatcaccaagtgctcttgcagggttatggtgtacacatgaaggttc 36989258  T
Q  465 aggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtct 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989257 aggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtct 36989158  T
Q  565 ctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccatt 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989157 ctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccatt 36989107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 274 - 615
Target Start/End: Original strand, 12804529 - 12804870
Alignment:
Q  274 ccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaacacttatcacatttccact 373  Q
    |||||||||||| | || ||||| ||||||||  | || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12804529 ccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacatttccact 12804628  T
Q  374 ttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacacatgaaggttcaggacaaac 473  Q
    |||||||||||||||||||| |||||||||| ||||| ||||| || |||||||| || |||| ||||| |||||| |||||||  ||||| ||||| |     
T  12804629 ttttctcaccatgctttctagaaaagtgcttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaa 12804728  T
Q  474 ataaaccctctttctaatt---tctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttga 570  Q
    ||||||   ||||||  ||   |||    || |  |||| ||||||||||||||||| |||||||||||||  || ||||| | |||||| || ||||||    
T  12804729 ataaac---ctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgctccctttga 12804825  T
Q  571 aaacccttgttacatatttcacatacgaatctgtttgtagccatt 615  Q
    || || || | ||| | ||||||||| ||||||||||| ||||||    
T  12804826 aaccctttttgacacacttcacatacaaatctgtttgttgccatt 12804870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 255 - 455
Target Start/End: Original strand, 28496105 - 28496305
Alignment:
Q  255 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 354  Q
    |||||| || |||| ||| |||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| || |||||||| || |||    
T  28496105 ataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaa 28496204  T
Q  355 cacttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacac 454  Q
    || || |||||||||||||| |||||||| |||||||||| |||||||||||| ||||| || || |||||||||||||||| ||||| |||||| ||||    
T  28496205 catttttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacac 28496304  T
Q  455 a 455  Q
    |    
T  28496305 a 28496305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 256 - 480
Target Start/End: Complemental strand, 12775063 - 12774839
Alignment:
Q  256 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 355  Q
    |||||||| ||||  || |||||||||||| | || ||| | ||||||||  |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  12775063 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaac 12774964  T
Q  356 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 455  Q
    |||| ||||| ||||| ||||||||||||||||||||| || |||| || ||||| ||||| || |||||||| || |||| ||||| |||||| |||||    
T  12774963 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacaca 12774864  T
Q  456 tgaaggttcaggacaaacataaacc 480  Q
    ||  ||||| ||||| | |||||||    
T  12774863 tgttggttctggacacaaataaacc 12774839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 255 - 491
Target Start/End: Original strand, 31644057 - 31644293
Alignment:
Q  255 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 354  Q
    |||||||||||| | ||| ||||| |||||||| ||||| |  ||||||||  |||| || ||||||||||||||||| |||||||||||  |||| ||     
T  31644057 atacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgag 31644156  T
Q  355 cacttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacac 454  Q
    ||||||||||||||||| |||||||||||||| ||||||| | | || || ||||| || |||||||| ||||| || |||| ||||||||| || ||||    
T  31644157 cacttatcacatttccattttttctcaccatgttttctactataatgtttcttaattcctgtaagatctccaagagcccttgaagggttatgatgaacac 31644256  T
Q  455 atgaaggttcaggacaaacataaaccctctttctaat 491  Q
    ||||||| || |||||||||||| | |||||| ||||    
T  31644257 atgaaggctctggacaaacataagctctctttttaat 31644293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 256 - 613
Target Start/End: Complemental strand, 4160503 - 4160143
Alignment:
Q  256 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 355  Q
    ||||| || |||| ||||||||||||||| || || ||  | || ||||| ||||||||||||||||||||||| || ||||| ||||||   |||||||    
T  4160503 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 4160404  T
Q  356 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 455  Q
    | || ||||| |||||||| |||||||| ||||| ||  |||||||||| || || ||||| || ||||||||||| |||| ||||| |||||| |||||    
T  4160403 atttctcacacttccacttcttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacaca 4160304  T
Q  456 tgaaggttcaggacaaacataaaccctctttctaatttctgcact---agttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttga 552  Q
    ||  || || ||||||||||| ||  ||||||| ||   | || |     ||||||  ||||||||||| ||||| || ||||||||    || || |||    
T  4160303 tgttggctctggacaaacatatactttctttcttatgatttcattgacgtttcttttctttagcttccatggcaaattatgtcctctcttatgaagctga 4160204  T
Q  553 agattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagcca 613  Q
    |||||||| |||||||||||||| |||||||| || ||||| | ||| |||||||| ||||    
T  4160203 agattttgatctctttgaaaacctttgttacaaatctcacaaatgaacctgtttgttgcca 4160143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 256 - 615
Target Start/End: Original strand, 50788819 - 50789178
Alignment:
Q  256 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 355  Q
    |||||||| ||||  || |||||||||||  | ||||| || || |||||  | || ||||| || ||||||||||||||||||||||| |||||||| |    
T  50788819 tacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagc 50788918  T
Q  356 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 455  Q
    |||||||||| ||||| || ||||||||||| || | | |  |||| || ||||| ||||| || ||||||||||| |||| ||||| ||| || || ||    
T  50788919 acttatcacacttccatttcttctcaccatgtttgcgagagtagtgtttcttaatcccagtgaggtcaccaagtgcccttgaagggtcatgatgaacgca 50789018  T
Q  456 tgaaggttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaaga 555  Q
    ||  || |||||||| | ||||||| |  |  ||  ||||    ||||  | || || |||||||||||||||||||||||||||| ||| || || |||    
T  50789019 tgtgggctcaggacacagataaacctttctcttaggttcttttgtagtcttctgcttaagcttccaaggcaagttgtgtcctcttctgtgaagctgtaga 50789118  T
Q  556 ttttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccatt 615  Q
    ||||| |||||||| || || ||||| ||||  ||||| |  || |||||||| ||||||    
T  50789119 ttttgctctctttggaaccctttgttgcatacctcacaaataaacctgtttgttgccatt 50789178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 256 - 422
Target Start/End: Complemental strand, 42287243 - 42287077
Alignment:
Q  256 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 355  Q
    ||||| || |||| ||| ||||| |||||| | ||||| || ||||||||  | || ||||| |||||||| ||||||||||||||||||||||| || |    
T  42287243 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagc 42287144  T
Q  356 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatc 422  Q
    | || |||||||||||||| |||||||| ||||| | | | || ||||||||||| ||||| |||||    
T  42287143 atttttcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatc 42287077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 514 - 614
Target Start/End: Original strand, 28496367 - 28496467
Alignment:
Q  514 agcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagcca 613  Q
    |||||||| || | ||||||||||||||  || |||||||| ||||| |||||||| || || ||||| ||||||||||| | |||||||||||| ||||    
T  28496367 agcttccatggaaggttgtgtcctcttctatgtagttgaaggttttgatctctttggaaccctttgttgcatatttcacagatgaatctgtttgttgcca 28496466  T
Q  614 t 614  Q
    |    
T  28496467 t 28496467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 615
Target Start/End: Complemental strand, 12774813 - 12774704
Alignment:
Q  506 tttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtt 605  Q
    |||| ||||||||||||||||| |||||||||||||  || ||||| | |||||| || ||||| || || || |  || | ||||||||| ||||||||    
T  12774813 tttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattttgctccctttggaaccctttttggcacacttcacatacaaatctgtt 12774714  T
Q  606 tgtagccatt 615  Q
    ||| ||||||    
T  12774713 tgttgccatt 12774704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 572
Target Start/End: Complemental strand, 42286993 - 42286927
Alignment:
Q  506 tttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaa 572  Q
    |||| |||||||||||||| |  |||||||||||||  || |||||||||||||| || ||||||||    
T  42286993 tttgctttagcttccaaggaagattgtgtcctcttctatgaagttgaagattttgctccctttgaaa 42286927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 8e-75; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 257 - 611
Target Start/End: Complemental strand, 33186860 - 33186506
Alignment:
Q  257 acctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaaca 356  Q
    |||||||||| | ||||||||| |||||||| || || || | |||||| | ||| || |||||||||||||||||||||||||||||||||||||||||    
T  33186860 acctggaaaaaacggttccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaaca 33186761  T
Q  357 cttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacacat 456  Q
     || |||||||||||||||||||||||||| |||||||||||||||||||| || ||||| | |||||| |  ||||| | ||| | ||| || |||||     
T  33186760 tttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaa 33186661  T
Q  457 gaaggttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagat 556  Q
    | |||||||||||||||||||||||| || |||||||||  ||| | ||||||| | || ||||| || |  || ||||||||||  || ||||||||||    
T  33186660 gtaggttcaggacaaacataaacccttttcctaatttctttacttgatctttgtctcagtttccatggtagattatgtcctcttctatgtagttgaagat 33186561  T
Q  557 tttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagc 611  Q
    | || ||||||||||| || ||||||||||||||||| || ||||||||||||||    
T  33186560 tctgatctctttgaaaccctttgttacatatttcacacacaaatctgtttgtagc 33186506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 256 - 606
Target Start/End: Original strand, 5788723 - 5789073
Alignment:
Q  256 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 355  Q
    ||||| || |||| |||||||||||||||| | ||||| || || |||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5788723 taccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaac 5788822  T
Q  356 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 455  Q
    |||| |||||||||||||| |||||||||||||||||  ||||||| || || || ||||| | ||| || | ||||||||  || | ||| || |||||    
T  5788823 acttttcacatttccacttcttctcaccatgctttctggaaaagtgtttcttgattccagtcaaatcccctaatgctcttgatggatcatgatgcacaca 5788922  T
Q  456 tgaaggttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaaga 555  Q
     |  ||||| ||||| ||||| ||  |||||||||| |||  ||| ||||||||||| | |||||| || || || || ||||||| ||| |||||||||    
T  5788923 agttggttctggacatacatatactttctttctaatctctttacttgttctttgtttcaacttccatggtaaattatgacctcttctgtgaagttgaaga 5789022  T
Q  556 ttttggtctctttgaaaacccttgttacatatttcacatacgaatctgttt 606  Q
    ||||| ||||||||||| || ||||| || || ||||||| ||| ||||||    
T  5789023 ttttgatctctttgaaaccctttgttgcagatctcacatatgaacctgttt 5789073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 614
Target Start/End: Original strand, 3271561 - 3271626
Alignment:
Q  549 ttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccat 614  Q
    |||||||||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| |||||    
T  3271561 ttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccat 3271626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 255 - 614
Target Start/End: Complemental strand, 42898425 - 42898066
Alignment:
Q  255 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 354  Q
    |||||| || |||| |||||||||||||||| ||||||| ||||| |||||  ||||||| ||||||||||| || |||||||| ||||| ||||||||     
T  42898425 ataccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagag 42898326  T
Q  355 cacttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacac 454  Q
    ||||| |||||||||||||| |||||||| |||||||| || |||||||| || |||||||| || || || |  |||||||  |||| |||||| ||||    
T  42898325 cacttgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacac 42898226  T
Q  455 atgaaggttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaag 554  Q
    | |  ||||| ||||| ||||||||  |||| || || ||    || |||||||| || | |||||| ||||| ||||||||||||   || ||||||||    
T  42898225 aagttggttctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaag 42898126  T
Q  555 attttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccat 614  Q
    ||| || ||||||||||| || |||||||| || ||||| | |||||| ||||| |||||    
T  42898125 attctgatctctttgaaatcctttgttacagatctcacaaatgaatctatttgttgccat 42898066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 256 - 614
Target Start/End: Original strand, 38895857 - 38896215
Alignment:
Q  256 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 355  Q
    ||||| |||||||| || ||||| |||||||||||||| || ||||||||  | || || || ||||||||||| ||||||||||||||    || || |    
T  38895857 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 38895956  T
Q  356 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 455  Q
    |||| ||||| |||||||| |||||||| || || |||||||||||||| || || ||||| | ||| || |  || |||| ||| | ||  || |||||    
T  38895957 acttctcacacttccacttcttctcaccgtgtttcctacaaaagtgcttctttatcccagttaaatctcccaaagcccttgaaggatgattatgaacaca 38896056  T
Q  456 tgaaggttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaaga 555  Q
    ||     || ||||| ||||| || ||||| || ||||||  ||| ||||||||||| ||||||||||| | ||| ||||| | ||| || |||||||||    
T  38896057 tgtcttctctggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatgtccacgtcgatgaagttgaaga 38896156  T
Q  556 ttttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccat 614  Q
    ||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| |||||    
T  38896157 ttttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccat 38896215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 315 - 407
Target Start/End: Complemental strand, 40040856 - 40040764
Alignment:
Q  315 atgagctttccaatcagattgaacagcatatttcttagaacacttatcacatttccactttttctcaccatgctttctacaaaagtgcttttt 407  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||||||||    
T  40040856 atgagccttccaatcagattgaactgcatatttcttagaacacttatcacacttccacttcttctcaccgtgctttctactaaagtgcttttt 40040764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 502 - 614
Target Start/End: Original strand, 5435662 - 5435774
Alignment:
Q  502 gttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatc 601  Q
    ||||||||||| ||||||||||| | ||| ||||| | ||| || |||||||||||||| || ||||||||| ||||   ||| |||||||| |||||||    
T  5435662 gttctttgtttcagcttccaaggtaggttatgtccacgtcgatgaagttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatc 5435761  T
Q  602 tgtttgtagccat 614  Q
    ||||||| |||||    
T  5435762 tgtttgttgccat 5435774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 614
Target Start/End: Complemental strand, 17859035 - 17858968
Alignment:
Q  547 agttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccat 614  Q
    |||||||||||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| |||||    
T  17859035 agttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccat 17858968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 256 - 614
Target Start/End: Original strand, 30518148 - 30518506
Alignment:
Q  256 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 355  Q
    ||||| |||||||| ||||||||||||||||||||||| || ||||||||| |||| || |||||||||||||| || |||||||||||    || || |    
T  30518148 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 30518247  T
Q  356 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 455  Q
    |||| ||||| |||||||| || ||||||||||||||||||||||||||||| || ||||| |  ||||||||||| |||| ||| | |||||| |||||    
T  30518248 acttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacaca 30518347  T
Q  456 tgaaggttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaaga 555  Q
     |     || ||||| |||||||| |||||  | ||||||    | ||||| || || |||||||| || |  || ||||| | ||  ||||||||||||    
T  30518348 agttttctctggacacacataaactctcttctttatttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtctatgcagttgaaga 30518447  T
Q  556 ttttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccat 614  Q
    ||||| |||||||||||||| ||   |||| ||||||| | ||||||||||||||||||    
T  30518448 ttttgatctctttgaaaacctttcccacatgtttcacacaagaatctgtttgtagccat 30518506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 22085505 - 22085644
Alignment:
Q  255 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 354  Q
    ||||||||| || || || ||||| ||||||||||| || || || ||||| || |||  |||||||||||||||||||||||| ||||||||||| |||    
T  22085505 atacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaa 22085604  T
Q  355 cacttatcacatttccactttttctcaccatgctttctac 394  Q
    ||||| ||||| |||||||| ||||||||||| |||||||    
T  22085605 cacttttcacacttccacttcttctcaccatgttttctac 22085644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 256 - 615
Target Start/End: Original strand, 44150800 - 44151159
Alignment:
Q  256 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 355  Q
    ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||  ||||    ||||| |||||||| ||||||||||||||| | ||||| |    
T  44150800 tacctagaaaatatggttccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagc 44150899  T
Q  356 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 455  Q
    |||| ||||||||||| || ||||||||||| || |  | ||| || ||||| || |||||||| ||||| | |||||  |  || |||||||| || ||    
T  44150900 acttgtcacatttccatttcttctcaccatgtttgcggctaaaatgttttttgattccagtaaggtcacctaatgctcgagatggattatggtgaacgca 44150999  T
Q  456 tgaaggttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaaga 555  Q
    ||| || ||||| || ||||| ||| | ||  | |  |||||||| ||||||||  | || ||||| || |  ||||| ||||||||||| |  ||||||    
T  44151000 tgatggctcagggcacacatacacctttttcttcacctctgcacttgttctttgcctaagtttccatggaagattgtgacctcttcggtgtaactgaaga 44151099  T
Q  556 ttttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccatt 615  Q
    || ||||| || |||||||||||||||||||| ||||| || ||||| ||||| ||||||    
T  44151100 ttctggtccctctgaaaacccttgttacatatctcacacacaaatctatttgttgccatt 44151159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 274 - 394
Target Start/End: Complemental strand, 40749498 - 40749378
Alignment:
Q  274 ccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaacacttatcacatttccact 373  Q
    ||||| ||||| || ||||| || ||||||||  |||| |  |||||||||||||||||||| || ||||||||||| |||||||||||||| ||||| |    
T  40749498 ccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaacacttatcacacttccatt 40749399  T
Q  374 ttttctcaccatgctttctac 394  Q
    | ||||| ||||| |||||||    
T  40749398 tcttctcgccatgttttctac 40749378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 615
Target Start/End: Complemental strand, 40749268 - 40749157
Alignment:
Q  504 tctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctg 603  Q
    |||||| ||||||||||| || | |||||| |||||||  || || |||||||| || |||||||| || || ||||| |||||||| || ||||||| |    
T  40749268 tctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttggaatcctttgttgcatatttcgcagacgaatcgg 40749169  T
Q  604 tttgtagccatt 615  Q
    || || ||||||    
T  40749168 ttcgtggccatt 40749157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 361 - 473
Target Start/End: Original strand, 52248460 - 52248572
Alignment:
Q  361 tcacatttccactttttctcaccatgctttctacaaaagtgctttttaataccagtaagatcaccaagtgctcttgcagggttatggtgtacacatgaag 460  Q
    ||||||||||| || |||||||||||||||||||||||||||||||| |  || || || ||||| |||||||||| ||| || ||||| || || |||     
T  52248460 tcacatttccatttcttctcaccatgctttctacaaaagtgctttttcactcctgtgaggtcaccgagtgctcttgaaggattgtggtggacgcaggaaa 52248559  T
Q  461 gttcaggacaaac 473  Q
    | |||||||||||    
T  52248560 gctcaggacaaac 52248572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 614
Target Start/End: Complemental strand, 12106027 - 12105878
Alignment:
Q  466 ggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctc 565  Q
    ||||| ||||| || ||||| || ||||||  ||| ||||||||||| ||||||||||| | ||| | ||| | ||| || |||||||||||||| |  |    
T  12106027 ggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatatccacgtcgatgaagttgaagattttgattcc 12105928  T
Q  566 tttgaaaacccttgt-tacatatttcacatacgaatctgtttgtagccat 614  Q
    |||||||| |||| |  ||| |||||||| |||||||||||||| |||||    
T  12105927 tttgaaaatccttttaaacagatttcacacacgaatctgtttgttgccat 12105878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 614
Target Start/End: Original strand, 46987920 - 46988069
Alignment:
Q  466 ggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttggtctc 565  Q
    ||||| ||||| || ||||| || ||||||  ||| ||||||||||| ||||||||||| | ||| | ||| | ||| || |||||||||||||| |  |    
T  46987920 ggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatatccacgtcgatgaagttgaagattttgattcc 46988019  T
Q  566 tttgaaaacccttgt-tacatatttcacatacgaatctgtttgtagccat 614  Q
    |||||||| |||| |  ||| |||||||| |||||||||||||| |||||    
T  46988020 tttgaaaatccttttaaacagatttcacacacgaatctgtttgttgccat 46988069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 614
Target Start/End: Complemental strand, 12938335 - 12938268
Alignment:
Q  547 agttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccat 614  Q
    |||||||||||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| |||||    
T  12938335 agttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccat 12938268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 614
Target Start/End: Complemental strand, 12952484 - 12952417
Alignment:
Q  547 agttgaagattttggtctctttgaaaacccttgttacatatttcacatacgaatctgtttgtagccat 614  Q
    |||||||||||||| || ||||||||| ||||   ||| |||||||| |||||||||||||| |||||    
T  12952484 agttgaagattttgatccctttgaaaatcctttagacaaatttcacacacgaatctgtttgttgccat 12952417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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