View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_high_71 (Length: 218)
Name: NF20242_high_71
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 44955966 - 44955784
Alignment:
| Q |
18 |
tatttttagtgcttttttctaaagattatgcattcttgttattattaagttttagaatctaataataacacctacttactaaaataatgaggaacatacg |
117 |
Q |
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| T |
44955966 |
tatttttagtgcttttttctaaagattatgcattcttcttattattaagttttagaatctaataataacacctacttactaaaataataaggaacatacg |
44955867 |
T |
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| Q |
118 |
tgttgatgaaattgaaaattagtagagaagggggaaagtaggattaggatattcctttccactataaatttgttgtgcacact |
200 |
Q |
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| T |
44955866 |
tgttgatgaaattgaaaattagtagagaagggggaaagtaggattaggatattcctttccactataaatttgttgtgcacact |
44955784 |
T |
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