View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20242_high_73 (Length: 216)

Name: NF20242_high_73
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20242_high_73
NF20242_high_73
[»] chr3 (1 HSPs)
chr3 (1-206)||(8522657-8522862)
[»] chr6 (2 HSPs)
chr6 (1-203)||(25523368-25523570)
chr6 (53-203)||(24140436-24140586)
[»] chr5 (8 HSPs)
chr5 (1-203)||(34233127-34233329)
chr5 (1-203)||(34240900-34241102)
chr5 (15-203)||(42117300-42117488)
chr5 (9-203)||(41572353-41572547)
chr5 (9-203)||(41617992-41618186)
chr5 (1-203)||(41713892-41714094)
chr5 (1-206)||(42123034-42123239)
chr5 (1-205)||(42128428-42128632)
[»] chr4 (1 HSPs)
chr4 (1-203)||(11117697-11117899)
[»] chr2 (3 HSPs)
chr2 (107-205)||(11994732-11994830)
chr2 (107-205)||(12248099-12248197)
chr2 (148-203)||(32682256-32682311)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 8522657 - 8522862
Alignment:
Q  1 tgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggttaattccaaaggaattgcacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |    
T  8522657 tgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggttaattccaaaggaatcacatc 8522756  T
Q  101 ggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8522757 ggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttgggaatatgacctgtaagtctgttatgggaaaggttaagc 8522856  T
Q  201 cctatg 206  Q
    ||||||    
T  8522857 cctatg 8522862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 25523570 - 25523368
Alignment:
Q  1 tgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggttaattccaaaggaattgcacc 100  Q
    |||||||||||||   ||||||||||||||| | | | ||||||||||||| || ||||||||||  ||| | |||||||||||||  ||||||  ||||    
T  25523570 tgaattgctttcctctaggtatttctcccaccaaatggttattggaaagattcatgacttcaagaaagtttaaattggttaattccgcaggaatcacacc 25523471  T
Q  101 ggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagc 200  Q
    ||||||||||||   ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||    
T  25523470 ggttaacatattcagggaaagatccagagattccaagtatgtcaagtttcctatggatttgggaatatgaccggtaagtctgttgtgggaaaggttaagc 25523371  T
Q  201 cct 203  Q
    |||    
T  25523370 cct 25523368  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 24140436 - 24140586
Alignment:
Q  53 caagacttcaagactgttaagattggttaattccaaaggaattgcaccggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcct 152  Q
    |||||||||||||||||| | ||||||||||||| |||||||  | ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||     
T  24140436 caagacttcaagactgttcatattggttaattccgaaggaatcacgccggttaacatatttgatgaaagattcaaagattccaagtatgtcaactttccg 24140535  T
Q  153 atggatttcggaatatgacctgtaagtctgttatgggaaaggttaagccct 203  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||| ||||    
T  24140536 atggattggggaatatgaccagtaagtctgttatgggaaaggttaatccct 24140586  T

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Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 34233329 - 34233127
Alignment:
Q  1 tgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggttaattccaaaggaattgcacc 100  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||||   ||||||   |||    
T  34233329 tgaattgctttccttgaggtatttctcccacaagatggttattggaaagatccaagacttcaagactgttcaaattggttaattctgcaggaatcatacc 34233230  T
Q  101 ggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagc 200  Q
     || | ||||||||| || |||||||| |||||||||| ||||||||||  ||||||||  |||||| |||| || ||||||||||| ||||||||||||    
T  34233229 agtgagcatatttgacgagagatccaacgattccaagtttgtcaagttttgtatggattgaggaataggaccagtgagtctgttatgtgaaaggttaagc 34233130  T
Q  201 cct 203  Q
    |||    
T  34233129 cct 34233127  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 34241102 - 34240900
Alignment:
Q  1 tgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggttaattccaaaggaattgcacc 100  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||||   ||||||   |||    
T  34241102 tgaattgctttccttgaggtatttctcccacaagatggttattggaaagatccaagacttcaagactgttcaaattggttaattctgcaggaatcatacc 34241003  T
Q  101 ggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagc 200  Q
     || | ||||||||| || |||||||| |||||||||| ||||||||||  ||||||||  |||||| |||| || ||||||||||| ||||||||||||    
T  34241002 agtgagcatatttgacgagagatccaacgattccaagtttgtcaagttttgtatggattgaggaataggaccagtgagtctgttatgtgaaaggttaagc 34240903  T
Q  201 cct 203  Q
    |||    
T  34240902 cct 34240900  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 42117300 - 42117488
Alignment:
Q  15 tgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggttaattccaaaggaattgcaccggttaacatatttg 114  Q
    |||||||||| |||||| ||| | ||||||||||||| |||||||| ||||  ||  | ||||||||||||   ||| ||   |||||| | ||||||||    
T  42117300 tgaggtatttttcccactagatggttattggaaagattcaagacttgaagaaagtctaaattggttaattctgcagggatcataccggtaagcatatttg 42117399  T
Q  115 aggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagccct 203  Q
    | || |||||||| |||||||||| || ||||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||    
T  42117400 acgagagatccaatgattccaagtttgacaagtttcccatggatttgggaatatgaccggtgagtctgttatgggaaaggttaagccct 42117488  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 41572547 - 41572353
Alignment:
Q  9 tttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggttaattccaaaggaattgcaccggttaaca 108  Q
    ||||| ||||||||||||||||| ||| | ||||  ||||||| ||| ||| ||| || ||| |||||| |||||||  |||||||| |||| || |  |    
T  41572547 tttccttgaggtatttctcccactagatggttatgagaaagattcaatactccaataccgttcagattgattaattctgaaggaattacaccagtgagta 41572448  T
Q  109 tatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagccct 203  Q
    ||||||| ||||||||||| ||||||| || || ||||||||||| |||||  |||||| |||| || |||||||||||||||||||||||||||    
T  41572447 tatttgacgaaagatccaatgattccatgtttgacaagtttcctacggattgaggaataggaccggtgagtctgttatgggaaaggttaagccct 41572353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 41618186 - 41617992
Alignment:
Q  9 tttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggttaattccaaaggaattgcaccggttaaca 108  Q
    ||||| ||||||||||||||||| ||| | ||||  ||||||| ||| ||| ||| || ||| |||||| |||||||  |||||||| |||| || |  |    
T  41618186 tttccttgaggtatttctcccactagatggttatgagaaagattcaatactccaataccgttcagattgattaattctgaaggaattacaccagtgagta 41618087  T
Q  109 tatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagccct 203  Q
    ||||||| ||||||||||| ||||||| || || ||||||||||| |||||  |||||| |||| || |||||||||||||||||||||||||||    
T  41618086 tatttgacgaaagatccaatgattccatgtttgacaagtttcctacggattgaggaataggaccggtgagtctgttatgggaaaggttaagccct 41617992  T

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Target: chr5; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 41714094 - 41713892
Alignment:
Q  1 tgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggttaattccaaaggaattgcacc 100  Q
    |||| |||||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||  ||  | ||||||||| |  | ||||||   |||    
T  41714094 tgaactgctttccttgaggtatttctcccacaagatggttattagaaagatccaagacttcaagaaagtccaaattggttaactttacaggaatccgacc 41713995  T
Q  101 ggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagc 200  Q
     || | ||||||||| || |||||||| |||||||||| | |||||||||| |||||||  ||||| ||||| || ||| ||||||  ||||||||||||    
T  41713994 agtgagcatatttgacgagagatccaatgattccaagtttatcaagtttcccatggattggggaatgtgaccagtgagtttgttatatgaaaggttaagc 41713895  T
Q  201 cct 203  Q
    |||    
T  41713894 cct 41713892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 42123034 - 42123239
Alignment:
Q  1 tgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggttaattccaaaggaattgcacc 100  Q
    |||| |||||||| ||||||||||||||||||||| | ||||| |||| ||| ||||||||||||  |   | |||||||| |||   ||||||  || |    
T  42123034 tgaactgctttccttgaggtatttctcccacaagatggttatttgaaatatctaagacttcaagaaagcccaaattggttagttctgcaggaatcacatc 42123133  T
Q  101 ggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagc 200  Q
     || | ||||||||| || ||||||||  ||||||||| || ||||| ||| || ||||  |||||| ||||  | ||||||||||||||||||||||||    
T  42123134 agtgagcatatttgatgagagatccaaccattccaagtttgacaagtatccaattgattggggaataggaccattgagtctgttatgggaaaggttaagc 42123233  T
Q  201 cctatg 206  Q
    ||||||    
T  42123234 cctatg 42123239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 42128428 - 42128632
Alignment:
Q  1 tgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggttaattccaaaggaattgcacc 100  Q
    ||||||||  ||| ||||||||||||||||| ||| | ||||| |||||||| ||||||||||||      | |||| |||||||   ||||||  || |    
T  42128428 tgaattgcggtccttgaggtatttctcccactagatggttatttgaaagatctaagacttcaagaaaacccaaattgcttaattctgcaggaatcacatc 42128527  T
Q  101 ggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagc 200  Q
     || | || |||||| || ||||||||  ||||||||| |||||||||||| |||||||| |||||| | ||  | ||| |||||||||||||||| ||     
T  42128528 agtgagcacatttgatgagagatccaaccattccaagtttgtcaagtttcccatggattttggaatagggccaatgagtttgttatgggaaaggttgagt 42128627  T
Q  201 cctat 205  Q
    |||||    
T  42128628 cctat 42128632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 11117697 - 11117899
Alignment:
Q  1 tgaattgctttccctgaggtatttctcccacaagacgattattggaaagatccaagacttcaagactgttaagattggttaattccaaaggaattgcacc 100  Q
    ||||||||||||| ||||||||||||||||| ||| | ||||| |||| ||| ||||||||||||  |   | ||||||||||||   ||||||  |||     
T  11117697 tgaattgctttccttgaggtatttctcccactagatggttatttgaaatatctaagacttcaagaaagcccaaattggttaattctgcaggaatcacact 11117796  T
Q  101 ggttaacatatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagc 200  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||| ||||||| ||||||    
T  11117797 ggttaacatatttgatgaaagatccaaagattccaagtatgccaagtttcctatggagttgggaatatgaccagtaagtctgttacgggaaagattaagc 11117896  T
Q  201 cct 203  Q
    |||    
T  11117897 cct 11117899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 11994830 - 11994732
Alignment:
Q  107 catatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagccctat 205  Q
    ||||||||| || |||||||   ||||||||| |||||||||||| |||||||| |||||| ||||  | |||||||||||||||||||||||||||||    
T  11994830 catatttgatgagagatccagccattccaagtttgtcaagtttcccatggatttgggaataggaccaatgagtctgttatgggaaaggttaagccctat 11994732  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 12248099 - 12248197
Alignment:
Q  107 catatttgaggaaagatccaaagattccaagtatgtcaagtttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagccctat 205  Q
    ||||||||| || |||||||   ||||||||| |||||||||||| |||||||| |||||| ||||  | |||||||||||||||||||||||||||||    
T  12248099 catatttgatgagagatccagccattccaagtttgtcaagtttcccatggatttgggaataggaccaatgagtctgttatgggaaaggttaagccctat 12248197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 32682311 - 32682256
Alignment:
Q  148 ttcctatggatttcggaatatgacctgtaagtctgttatgggaaaggttaagccct 203  Q
    |||| |||||||  ||||||||| | || |||||||||||||||||||||||||||    
T  32682311 ttcccatggattggggaatatgatcggtgagtctgttatgggaaaggttaagccct 32682256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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