View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20242_low_1 (Length: 1141)
Name: NF20242_low_1
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 1038; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 1038; E-Value: 0
Query Start/End: Original strand, 10 - 1127
Target Start/End: Original strand, 29006989 - 29008107
Alignment:
| Q |
10 |
aggagcagagagtctacaatcaaattctcaaattgagtatacagagtttactttgaactaaacaagttcatttgctaacaaacaaattcacagtagcaaa |
109 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006989 |
aggagcaaagagtctacaatcaaattctcaaattgagtatacagagtttactttgaactaaacaagttcatttgctaacaaacaaattcacagtagcaaa |
29007088 |
T |
|
| Q |
110 |
gattctcacattagcaacacaagaacatcactcactttggaacaattgactaaagtcactaaaccaaatcacaatctatatgtactaaacaatatgtcat |
209 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29007089 |
gattctcacattagcaacacaagatcatcactcactttggaacaattgactaaagtcactaaaccaaatcacaatctatatgtactaaacaatatgtcat |
29007188 |
T |
|
| Q |
210 |
tataaatgaccaaacacccacatcagtgaaataaactgtctagtgtgagctagctagttgatagctgaaaggtgaacnnnnnnntaagaccaagcgaaag |
309 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
29007189 |
tatgaatgaccaaacacccacatcagtgaaataaactgtctagtgtgagctagctagttgatagctgaaaggtgaacaaaaaaagaagaccaagcgaaag |
29007288 |
T |
|
| Q |
310 |
ctcggatgattacgagtgtaatcaatggaacacccaaacgaccctcatctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactagg |
409 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29007289 |
ctaagatgattacgagtgtaatcaatggaacacccaaacgaccctcatctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactagg |
29007388 |
T |
|
| Q |
410 |
aggagaatcactgtgtggtggactaggaggagaatcaccattcggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttcca |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
29007389 |
aggagaatcactgtgtggtggactaggaggagaatcaccattcggtggactaggaggagaatgagggcgtggtgcagaactaggtggaggagaagttcca |
29007488 |
T |
|
| Q |
510 |
gtgttgttggactgagcttgaactttgacttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtga |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007489 |
gtgttgttggactgagcttgaactttgacttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtga |
29007588 |
T |
|
| Q |
610 |
ggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacgg |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29007589 |
ggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacgg |
29007688 |
T |
|
| Q |
710 |
tgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaa-ttcaagtctcgaaaaatacactttacattgttccca |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
29007689 |
tgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaatttcaagtctcgaaaaatacactttacattgttccca |
29007788 |
T |
|
| Q |
809 |
cctcttattttgagttttttctctgcttttcccaccattatcacatcatgttttatatcaatatctttctcatttcgttattttcgtaacctagactctg |
908 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29007789 |
cctcttattttgagttttttctctgtttttcccaccattatcacatcatgttttatatcaatatatttctcatttcgttatttttgtaacctagactctg |
29007888 |
T |
|
| Q |
909 |
agaacgaaaactatcatgtaatgcataagagataatagatggaccgacttccttggattcacgagtcccacattcacacatttgaaaaccagtgacctta |
1008 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29007889 |
agaacgaaaactatcatgtaatgcataagagataatagatggaccaacttccttggattcacgagtcccacattcacacatttgaaaaccagtgacctta |
29007988 |
T |
|
| Q |
1009 |
tggtttatattgaaccgcccaaattcaaattctgtatttggaattatacaatgaaaattgaattttcattcatttgaacagttccattgaaattttgacg |
1108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29007989 |
tggtttatattgaacagcccaaattcaaattctgtatttggaattatacaatgaaaattgaattttcattcatttgaacagttcgattgaaattttgacg |
29008088 |
T |
|
| Q |
1109 |
gtcactaatgtcttgaatg |
1127 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
29008089 |
gtcactaatgtcttgaatg |
29008107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 453 - 1112
Target Start/End: Complemental strand, 21409776 - 21409120
Alignment:
| Q |
453 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
552 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
21409776 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggagg-----------tgttgttggactgagcttgaactttgactttgagtttcaggc |
21409688 |
T |
|
| Q |
553 |
cttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatt |
652 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| | ||||| ||| ||||||||||| |
|
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| T |
21409687 |
cttgttggcaatggcccattctgccacaaacgaagtagcgttttcctgattcaatgacgtggatcactgtttctcctgagttgtatgtcgaaatggcatt |
21409588 |
T |
|
| Q |
653 |
tgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccg |
752 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |
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|
| T |
21409587 |
tgctattgtacatgtgttgtacccttgttggtttacctcaattacgtcgtacaacggtgtgtaagtaaacactgtcaatcatcacatatccaatgaa-ca |
21409489 |
T |
|
| Q |
753 |
ttcgttattacaaattttaattca-agtctcgaaaaatacactttacattgttcccacctctta--ttttgag-ttttttctctg-cttttcccaccatt |
847 |
Q |
| |
|
|| |||||||| |||||||||| | | |||||||||||||||||| ||||||| || |||| ||||||| ||||||||||| |||| |||||||| |
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|
| T |
21409488 |
tttgttattaccaattttaatttagacattcgaaaaatacactttactttgttcctgccacttattttttgagtttttttctctgtttttttccaccatt |
21409389 |
T |
|
| Q |
848 |
atcacatcatgttttata---tcaatatctttctcatttcgttattttcgtaacctagactctgagaacgaaaactatcatgtaatgcataagag-ataa |
943 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| || ||||||||||| || |||| |
|
|
| T |
21409388 |
atcacatcatgttttataccgtcaatatctttctcatctcgttattttcataacctagactccaagaacgaaaactaccacgtaatgcataaaagaataa |
21409289 |
T |
|
| Q |
944 |
tagatggaccgacttccttggattcacgagtcccacattcacacatttgaaaaccagtgaccttatggtttatattgaaccgcccaaattcaaattctgt |
1043 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||||| | ||||||| |||| || | |||||||||||||||| |
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|
| T |
21409288 |
tagatggaccgacgtccttgcattcacgagtcgtacattcacacatttgaaaacgagtgacagtttggtttagattggactgttcaaattcaaattctgt |
21409189 |
T |
|
| Q |
1044 |
atttggaattatacaatgaaaattgaattttcattcatttgaacagttccattgaaattttgacggtca |
1112 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||| ||| ||||||||||| ||||||| |
|
|
| T |
21409188 |
atttggaattatacattgaaaattgaattttcagtcttttgaacggtttgattgaaattttaacggtca |
21409120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 603 - 1127
Target Start/End: Complemental strand, 21461926 - 21461406
Alignment:
| Q |
603 |
tcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgt |
702 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| ||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||| || |||| || |
|
|
| T |
21461926 |
tcagtgaggtggatcactatttctccagagttgtatgtcgaaacggcgtttgctattgtacatgtgttgtacccttgttggtttacctcaattacgttgt |
21461827 |
T |
|
| Q |
703 |
ataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaattca-agtctcgaaaaatacactttacatt |
801 |
Q |
| |
|
| |||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||| |||||||||| | | || ||||||||||||||| || |
|
|
| T |
21461826 |
acaacggtgtgtaagtaaacgctgtcaatcatcacatatccaatgaacattt-gttattactaattttaatttatacattcaaaaaatacactttacttt |
21461728 |
T |
|
| Q |
802 |
gttcccacctcttatttt--gagttttttctctgcttttcccaccattatcacatcatgttttatatc---aatatctttctcatttcgttattttcgta |
896 |
Q |
| |
|
||||| || |||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
21461727 |
gttcctgccacttattttttgagttttttt----------ccaccattatcacatcatgttttatatcgtcaatatctttctcatttcgttattttcata |
21461638 |
T |
|
| Q |
897 |
acctagactctgagaacgaaaactatcatgtaatgcataagaga-taatagatggaccgacttccttggattcacgagtcccacattcacacatttgaaa |
995 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||||| | ||| ||||||||||||| || |||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
21461637 |
acctagactccaagaacgaaaactaccacgtaatgcatgaaagaataatagatggaccaacgtccttgcattcacgagtcctacattcacacatttgaaa |
21461538 |
T |
|
| Q |
996 |
accagtgaccttatggtttatattgaaccgcccaaattcaaattctgtatttggaattatacaatgaaaattgaattttcattcatttgaacagttccat |
1095 |
Q |
| |
|
||||||||| | ||||||| |||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||| || || |||| ||| || |
|
|
| T |
21461537 |
accagtgacagtttggtttagattggactgttcaaattcaaattctgtatttgaaattatacaatgaaaattgaattttcagtctttcgaacggtttgat |
21461438 |
T |
|
| Q |
1096 |
tgaaattttgacggtcactaatgtcttgaatg |
1127 |
Q |
| |
|
||||||||| ||| || ||||||||| ||||| |
|
|
| T |
21461437 |
tgaaattttaacgatcgctaatgtctcgaatg |
21461406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 453 - 587
Target Start/End: Complemental strand, 21465563 - 21465429
Alignment:
| Q |
453 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
552 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
21465563 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggaggagaagttccagtgttgttggactgagcttgaactttgactttgagtttcaggc |
21465464 |
T |
|
| Q |
553 |
cttgttgacaatgacccattctgccacaaacgaag |
587 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
21465463 |
cttgttggcaatggcccattctgccacaaacgaag |
21465429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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