View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_11 (Length: 577)
Name: NF20242_low_11
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_11 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 102797 - 102487
Alignment:
| Q |
16 |
caatcaacagaccctttcaaattctattgagaatacagatagatattatcgagggatgagtccaactagttaggaaccaacaaacccttgcaggtataat |
115 |
Q |
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| T |
102797 |
caatcaacagaccctttcaaattctattgagaatacatatagatattatcgagggatgagtccaacatgttaggaaccaacagacccttgcaggtataat |
102698 |
T |
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| Q |
116 |
agaatcacagaccctttccgattttttgcctgaaccaaaaggcggcttggctggtcgccgcattgagacaccaaaatggcaacaagaacaggatgaggtt |
215 |
Q |
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| T |
102697 |
agaatcacagaccctttccgattttttgcctgcaccaaaaggcggtttggctagtcgccgcattgagaggccaaaatggcaacaagaacaagatgaggtt |
102598 |
T |
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| Q |
216 |
gctgcttccccctagttttgtatcaacaaaaatcaccaacaagaatcgaccaccgtggcacgtcgacagtggttgaccgagaacaacaaaaccaatccat |
315 |
Q |
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| T |
102597 |
gctgcttccccctagttttgtatcaacaaaaatcaccaacaagaatcgaacaccgtggcacgtcgacggtggttgaccgagaacaaaaaaaccaattcgt |
102498 |
T |
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| Q |
316 |
caccgcaacca |
326 |
Q |
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| T |
102497 |
caccgcaacca |
102487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 328 - 575
Target Start/End: Complemental strand, 102458 - 102211
Alignment:
| Q |
328 |
ttaaataccaacaaactatttccacaatgattcaaatcaaagaggagcagataacatatattagcctgaaaccaaaacaagataaatgcaaaattattta |
427 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
102458 |
ttaaattccaacaaactatatccacaatgattcaaatcaaagaggagcagataacatatattagcctgaaaccaaaacaagataaatgctaaattatttt |
102359 |
T |
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| Q |
428 |
gacatatcttaaattatatgtttttaccaattttagatagataattagtatgtgtataactattcgnnnnnnnnnnnnnnnnnnnnnnnnttaagataga |
527 |
Q |
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| T |
102358 |
gacatatcttaaattatatgtttttaccaattttagatagataattagtatgtgtatcactactcgaaaaaataaaatcatttaaaaaaattaagataga |
102259 |
T |
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| Q |
528 |
aaacaatgaaatcccactctagtaaggtagtataatttacccacgaga |
575 |
Q |
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| T |
102258 |
aaacaatgaaatcccactctagtaaggtaatataatttacacacgaga |
102211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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