View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_13 (Length: 534)
Name: NF20242_low_13
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_13 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 20 - 534
Target Start/End: Original strand, 654137 - 654651
Alignment:
| Q |
20 |
ttgttcaaacttgtgttcacacactaaactataaactcaatatttgctgagagatgaaatcacttcatattttattcaaggaaaaagcatggcttaaata |
119 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
654137 |
ttgttcaaacttgtgttgacacactaaaatataaactcaatatttgctgagagatgaaatcacttcatgttttattcaaagaaaaagcatggcttaaata |
654236 |
T |
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| Q |
120 |
gcctttacaaaaataaaagtcacgttacccactagcagcctaactaaccaaaaaataaggccctgaaaaataggtcacgttattaactaaacagagagaa |
219 |
Q |
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| T |
654237 |
gcctttacaagaataaaagtcacgttacccactagcagcctaactaaccaaaaaataaggacctgaaaaataggtcacgttattaactaaacagagagaa |
654336 |
T |
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| Q |
220 |
aatagccactattaattaaaactaattttaatgaagaataggtccatcaagaataagtccaacaatccctcctttaagctaaatatggggagtaaatcag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
654337 |
aatagccactattaattaaaactaattttaatgaagaacaggtccatcaagaataagtccaacaatccctcctttaagctgaatacggggagtaaatcag |
654436 |
T |
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| Q |
320 |
cttacttctattgcagacatcagccccagcatctctcgtagtttgataaattgttcattcttcaatggcattgtcataatatcagcaatttgattctggg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
654437 |
cttacttctattgcagacatcagccccagcatctctcgtagtttgataaattgttccttcttcaatggttttgtcataatatcagcaatttgattctggg |
654536 |
T |
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| Q |
420 |
tattacggtacttcaatttcacagttccttcattcaccaagtctctcaaaaaatgaaacttcacatctatgtgtttacttttgccatggaacacagaatg |
519 |
Q |
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| T |
654537 |
tattacagtacttcaatttcacagttccttcattcaccaagtctctcaaaaaatgaaacttcacatctatgtgtttacttttgccatggaacacgaaatg |
654636 |
T |
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| Q |
520 |
ctttgacaattgtat |
534 |
Q |
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| T |
654637 |
ctttgacaattgtat |
654651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 658466 - 658729
Alignment:
| Q |
20 |
ttgttcaaacttgtgttcacacactaaactataaactcaatatttgctgagagatgaaatcacttcatattttattcaaggaaaaagcatggcttaaata |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| |
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| T |
658466 |
ttgttcaaacttgtgttcacacactaaaatataaactcaatatttgctgagagatgaaatcatttcatgttttattcaaagaaaaagcatggcttaaata |
658565 |
T |
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| Q |
120 |
gcctttacaaaaataaaagtcacgttacccactagcagcctaactaaccaaaaaataaggccctgaaaaataggtcacgttattaactaaacagagagaa |
219 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
658566 |
gcctttacaagaataaaagtcatgttacccactagcagcctaactaaccaaaaaataaggacctgaaaaataggtcacgttattaactacacagagagaa |
658665 |
T |
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| Q |
220 |
aatagccactattaattaaaactaattttaatgaagaataggtccatcaagaataagtccaaca |
283 |
Q |
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| T |
658666 |
aatagccactattaattaaaactaattttaatgaagaacaggtccatcaagaataagtccaaca |
658729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 515
Target Start/End: Complemental strand, 14247786 - 14247723
Alignment:
| Q |
452 |
ttcaccaagtctctcaaaaaatgaaacttcacatctatgtgtttacttttgccatggaacacag |
515 |
Q |
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| T |
14247786 |
ttcaccaagtccctaagaaagtgaaatttcacatctatatgtttactttttccatgaaacacag |
14247723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 515
Target Start/End: Original strand, 196 - 259
Alignment:
| Q |
452 |
ttcaccaagtctctcaaaaaatgaaacttcacatctatgtgtttacttttgccatggaacacag |
515 |
Q |
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| T |
196 |
ttcaccaagtccctaagaaagtgaaatttcacatctatatgtttactttttccatgaaacacag |
259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 515
Target Start/End: Original strand, 5640 - 5703
Alignment:
| Q |
452 |
ttcaccaagtctctcaaaaaatgaaacttcacatctatgtgtttacttttgccatggaacacag |
515 |
Q |
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| T |
5640 |
ttcaccaagtccctaagaaagtgaaatttcacatctatatgtttactttttccatgaaacacag |
5703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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