View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_15 (Length: 516)
Name: NF20242_low_15
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_15 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 281 - 516
Target Start/End: Original strand, 14542485 - 14542720
Alignment:
| Q |
281 |
ctcagtgcatgttcatataatattcctggtccacaatggtggtacgtaaccagccacttgcaaatggacaaatatcttatagccaccaaaataacaccat |
380 |
Q |
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| T |
14542485 |
ctcagtgcatgttcatataatatttctggtccacaatggtggtacgtaaccagccacttgcaaatggacaaatatcttatagccaccaaaataacaccat |
14542584 |
T |
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| Q |
381 |
aaacatttttactaatagatttcagaaattgagtccnnnnnnntagtagattttaaattgtctttgtgcactataaaaccacacactcatccctcacatt |
480 |
Q |
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| T |
14542585 |
aaacatttttactaatagatttcagaaattgagtccaaaaaaatagtagattttaaattgtctttgtgcactataaagccacacactcatccctcacatt |
14542684 |
T |
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| Q |
481 |
cctcaacctcaaacatcatcataacaaaacaaaaaa |
516 |
Q |
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| T |
14542685 |
cctcaacctcaaacatcatcataacaaaacaaaaaa |
14542720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 14542317 - 14542393
Alignment:
| Q |
113 |
tgtgatgcatagaaaagtgaaagaaaacattttatttttcaggaaagagagaaaggaaacatagaactgataataat |
189 |
Q |
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| T |
14542317 |
tgtgatgcatagaaaagtgaaaggaaacattttatttttcaggaaagagagaaaggaaacatagaactgataataat |
14542393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 14580952 - 14580887
Alignment:
| Q |
435 |
aaattgtctttgtgcactataaaaccacacactcatccctcaca--ttcctcaacctcaaacatca |
498 |
Q |
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| T |
14580952 |
aaattgtccttgtgcactataaaaccacacactcatccctcacaatatcttcaacctcaaacatca |
14580887 |
T |
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