View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20242_low_16 (Length: 506)

Name: NF20242_low_16
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20242_low_16
NF20242_low_16
[»] chr3 (26 HSPs)
chr3 (14-490)||(9665839-9666315)
chr3 (16-59)||(5236257-5236300)
chr3 (16-59)||(22834807-22834850)
chr3 (16-59)||(40734822-40734865)
chr3 (16-59)||(44700284-44700327)
chr3 (16-59)||(51399139-51399182)
chr3 (16-59)||(4160059-4160103)
chr3 (16-59)||(29813386-29813430)
chr3 (16-59)||(761169-761211)
chr3 (16-59)||(31314765-31314808)
chr3 (16-60)||(9581608-9581653)
chr3 (27-60)||(27305518-27305551)
chr3 (16-59)||(9634621-9634665)
chr3 (16-59)||(9635923-9635967)
chr3 (16-59)||(29196189-29196233)
chr3 (16-59)||(2074883-2074925)
chr3 (16-59)||(40735707-40735750)
chr3 (16-59)||(47304586-47304629)
chr3 (16-59)||(7764790-7764834)
chr3 (16-59)||(19683687-19683731)
chr3 (16-59)||(23391712-23391756)
chr3 (16-59)||(23410131-23410175)
chr3 (16-59)||(29811193-29811237)
chr3 (19-59)||(31340018-31340058)
chr3 (16-59)||(39153164-39153208)
chr3 (27-59)||(51351941-51351973)
[»] chr4 (29 HSPs)
chr4 (51-476)||(45764876-45765301)
chr4 (152-490)||(21857878-21858221)
chr4 (152-490)||(21913741-21914084)
chr4 (163-490)||(35194365-35194698)
chr4 (163-397)||(12594983-12595219)
chr4 (16-60)||(48893442-48893486)
chr4 (17-59)||(52095162-52095204)
chr4 (16-57)||(56178438-56178479)
chr4 (16-59)||(36463196-36463239)
chr4 (16-59)||(45686987-45687030)
chr4 (16-59)||(52082463-52082506)
chr4 (16-59)||(54199708-54199751)
chr4 (16-60)||(26175435-26175480)
chr4 (16-60)||(48143373-48143418)
chr4 (16-59)||(12739353-12739397)
chr4 (16-56)||(47038219-47038259)
chr4 (21-59)||(5872145-5872183)
chr4 (18-59)||(12743728-12743770)
chr4 (16-57)||(52467159-52467201)
chr4 (16-59)||(5369881-5369925)
chr4 (16-59)||(29999628-29999672)
chr4 (16-59)||(36994854-36994898)
chr4 (16-59)||(37740950-37740994)
chr4 (20-55)||(3914044-3914079)
chr4 (16-59)||(34570214-34570257)
chr4 (16-61)||(29254817-29254863)
chr4 (16-60)||(31474471-31474513)
chr4 (16-59)||(9927258-9927302)
chr4 (16-59)||(50262487-50262531)
[»] chr6 (12 HSPs)
chr6 (63-490)||(3377279-3377706)
chr6 (152-482)||(32154813-32155147)
chr6 (164-472)||(14608320-14608631)
chr6 (16-62)||(26954088-26954134)
chr6 (17-60)||(28137210-28137253)
chr6 (16-59)||(602903-602947)
chr6 (16-57)||(3038729-3038770)
chr6 (27-60)||(16569357-16569390)
chr6 (16-59)||(22963508-22963552)
chr6 (16-59)||(23824841-23824885)
chr6 (27-59)||(257245-257277)
chr6 (16-59)||(16452127-16452171)
[»] chr5 (26 HSPs)
chr5 (51-422)||(21361875-21362246)
chr5 (163-482)||(13544836-13545159)
chr5 (152-490)||(27341433-27341775)
chr5 (160-482)||(25455861-25456188)
chr5 (152-480)||(38424369-38424698)
chr5 (152-358)||(27188178-27188384)
chr5 (400-489)||(27188390-27188483)
chr5 (16-59)||(5887235-5887278)
chr5 (16-59)||(31183298-31183341)
chr5 (16-60)||(40147566-40147611)
chr5 (16-59)||(16649635-16649678)
chr5 (16-59)||(33832003-33832046)
chr5 (16-58)||(13240076-13240118)
chr5 (16-59)||(534083-534127)
chr5 (16-59)||(3075549-3075593)
chr5 (16-59)||(30682722-30682766)
chr5 (16-59)||(19806687-19806729)
chr5 (16-62)||(28750452-28750499)
chr5 (16-62)||(8565745-8565791)
chr5 (16-57)||(32637148-32637190)
chr5 (16-60)||(13488525-13488570)
chr5 (457-490)||(21362249-21362282)
chr5 (16-59)||(30182913-30182957)
chr5 (16-59)||(38747309-38747353)
chr5 (16-59)||(39468348-39468392)
chr5 (16-59)||(42426035-42426079)
[»] chr7 (33 HSPs)
chr7 (152-490)||(30022657-30022999)
chr7 (152-490)||(21386730-21387072)
chr7 (163-444)||(29644417-29644698)
chr7 (163-490)||(33696842-33697164)
chr7 (347-429)||(2373011-2373093)
chr7 (68-178)||(2372744-2372854)
chr7 (16-62)||(38671022-38671068)
chr7 (16-59)||(41648814-41648857)
chr7 (16-58)||(48489756-48489798)
chr7 (16-59)||(6430452-6430496)
chr7 (16-59)||(14069633-14069677)
chr7 (16-59)||(14379661-14379705)
chr7 (16-59)||(18126971-18127015)
chr7 (16-59)||(23555366-23555410)
chr7 (16-59)||(26417641-26417685)
chr7 (16-59)||(8153662-8153705)
chr7 (16-59)||(25616180-25616223)
chr7 (16-59)||(27348142-27348185)
chr7 (16-59)||(36146212-36146255)
chr7 (16-62)||(30024559-30024605)
chr7 (152-221)||(42491215-42491283)
chr7 (19-60)||(48491904-48491945)
chr7 (16-59)||(4510339-4510383)
chr7 (16-59)||(4512181-4512225)
chr7 (16-59)||(31732768-31732812)
chr7 (16-55)||(43864569-43864609)
chr7 (16-59)||(47675936-47675980)
chr7 (16-57)||(2360774-2360816)
chr7 (16-56)||(12096969-12097008)
chr7 (16-59)||(19502503-19502547)
chr7 (16-60)||(24525305-24525349)
chr7 (16-59)||(41317238-41317282)
chr7 (16-59)||(47673744-47673788)
[»] chr2 (30 HSPs)
chr2 (152-462)||(14252129-14252439)
chr2 (152-482)||(10317201-10317534)
chr2 (152-452)||(5607061-5607361)
chr2 (152-490)||(9758553-9758883)
chr2 (265-482)||(10316155-10316376)
chr2 (265-482)||(10315427-10315648)
chr2 (265-482)||(10315791-10316012)
chr2 (265-482)||(10316837-10317058)
chr2 (265-435)||(10316531-10316701)
chr2 (16-61)||(24885910-24885955)
chr2 (16-60)||(42362670-42362714)
chr2 (16-59)||(723547-723590)
chr2 (16-59)||(34139573-34139616)
chr2 (16-59)||(36987875-36987918)
chr2 (16-62)||(36773883-36773929)
chr2 (16-61)||(33162252-33162297)
chr2 (16-60)||(6594803-6594847)
chr2 (16-59)||(2334218-2334261)
chr2 (16-59)||(17057169-17057212)
chr2 (16-59)||(17085152-17085195)
chr2 (16-59)||(11690812-11690856)
chr2 (16-59)||(14633628-14633671)
chr2 (16-59)||(14202224-14202267)
chr2 (16-59)||(26354134-26354176)
chr2 (16-57)||(13122084-13122124)
chr2 (16-60)||(29868193-29868238)
chr2 (16-59)||(11151395-11151439)
chr2 (27-59)||(28672196-28672228)
chr2 (16-59)||(36205464-36205508)
chr2 (16-59)||(36317813-36317857)
[»] chr1 (34 HSPs)
chr1 (163-482)||(43214749-43215072)
chr1 (152-490)||(22388604-22388946)
chr1 (163-462)||(44209365-44209664)
chr1 (163-489)||(32814499-32814829)
chr1 (296-462)||(44209675-44209841)
chr1 (16-60)||(833969-834013)
chr1 (16-60)||(37503361-37503405)
chr1 (16-59)||(8550584-8550627)
chr1 (16-59)||(40122001-40122044)
chr1 (14-59)||(1833831-1833876)
chr1 (16-61)||(45644156-45644201)
chr1 (16-59)||(28265359-28265402)
chr1 (16-59)||(44455485-44455528)
chr1 (18-59)||(10925549-10925590)
chr1 (27-64)||(37282493-37282530)
chr1 (16-59)||(28220026-28220070)
chr1 (16-59)||(3846921-3846964)
chr1 (16-59)||(31659563-31659606)
chr1 (16-59)||(49918675-49918718)
chr1 (19-57)||(13659153-13659191)
chr1 (11-59)||(37559664-37559713)
chr1 (11-55)||(3189664-3189708)
chr1 (11-55)||(3198481-3198525)
chr1 (11-55)||(3207320-3207364)
chr1 (16-59)||(20762993-20763037)
chr1 (16-59)||(28223221-28223265)
chr1 (16-59)||(196710-196753)
chr1 (16-59)||(23555071-23555114)
chr1 (16-59)||(50166980-50167023)
chr1 (27-59)||(927785-927817)
chr1 (16-59)||(4552448-4552492)
chr1 (16-59)||(13137780-13137824)
chr1 (16-59)||(19752988-19753032)
chr1 (19-58)||(30476247-30476287)
[»] scaffold0140 (1 HSPs)
scaffold0140 (152-490)||(4725-5062)
[»] chr8 (21 HSPs)
chr8 (16-59)||(6599290-6599333)
chr8 (16-59)||(6674743-6674786)
chr8 (16-57)||(41366420-41366461)
chr8 (16-59)||(5689592-5689635)
chr8 (16-59)||(12702431-12702474)
chr8 (16-59)||(30143665-30143708)
chr8 (16-59)||(15213111-15213155)
chr8 (16-59)||(4731983-4732026)
chr8 (16-59)||(8965492-8965534)
chr8 (16-59)||(18105876-18105919)
chr8 (16-59)||(33352475-33352518)
chr8 (16-59)||(40321400-40321442)
chr8 (22-60)||(1345175-1345213)
chr8 (19-60)||(4743026-4743068)
chr8 (22-59)||(4734038-4734075)
chr8 (16-59)||(1746018-1746062)
chr8 (16-55)||(3303474-3303514)
chr8 (16-60)||(8154105-8154148)
chr8 (27-59)||(11711805-11711837)
chr8 (16-59)||(19945158-19945202)
chr8 (27-59)||(32901989-32902021)
[»] scaffold0006 (1 HSPs)
scaffold0006 (19-57)||(148914-148952)


Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Complemental strand, 9666315 - 9665839
Alignment:
Q  14 agatcatagtttgtattggtgtgattttgagtccgaattcacaacactacgtatggtgagaaaaccttatgaggattgttgcaaagttaggatgattttg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9666315 agatcatagtttgtattggtgtgattttgagtccgaattcacaacactacgtatggtgagaaaaccttatgaggattgttgcaaagttaggatgattttg 9666216  T
Q  114 aaaggattaggcataagggttggtgagagagatgtgtcaatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9666215 aaaggattaggcataagggttggtgagagagatgtgtcaatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaag 9666116  T
Q  214 gaggattaccaaaagtatttattgtaaagaaattcattgttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattg 313  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9666115 gaggattaccaaaagtatttattggaaagaaatacattgttgtagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattg 9666016  T
Q  314 ttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaa 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9666015 ttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaa 9665916  T
Q  414 atctactatgaagatgattatgaagaagatgataattgtgaggttggtgagtgtggattccaaaggtgtcctcattg 490  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9665915 atctactatgaagatgattatgaagaagatgataattgtgaggttggtgagtgtggattccaaaggtgtcctcattg 9665839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5236300 - 5236257
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5236300 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 5236257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 22834850 - 22834807
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22834850 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 22834807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 40734822 - 40734865
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  40734822 atcatagtttgtattggtgtgattttgagaccgaattcacaaca 40734865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 44700327 - 44700284
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  44700327 atcatagtttgtattggtgtgattttgagtccgaattcaaaaca 44700284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 51399139 - 51399182
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  51399139 atcatagtttgtattggtatgattttgagtccgaattcacaaca 51399182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 4160103 - 4160059
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  4160103 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 4160059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 29813386 - 29813430
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  29813386 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 29813430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 761169 - 761211
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  761169 atcatagtttgtattggtgtga-tttgagtccgaattcacaaca 761211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 31314765 - 31314808
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  31314765 atcatagtttgtattggtgtgattttgagtcggtattcacaaca 31314808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 9581608 - 9581653
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtcc-gaattcacaacac 60  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||    
T  9581608 atcatagtttatattggtgtgattttgagtccggaattcacaacac 9581653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 27305551 - 27305518
Alignment:
Q  27 tattggtgtgattttgagtccgaattcacaacac 60  Q
    ||||||||||||||||||||||||||||||||||    
T  27305551 tattggtgtgattttgagtccgaattcacaacac 27305518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 9634665 - 9634621
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtcc-gaattcacaaca 59  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  9634665 atcatagtttgtattggtgtgattttgagaccggaattcacaaca 9634621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 9635967 - 9635923
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtcc-gaattcacaaca 59  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  9635967 atcatagtttgtattggtgtgattttgagaccggaattcacaaca 9635923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 29196233 - 29196189
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  29196233 atcatagtttgtattggtgtgagatttgagtccgaattcacaaca 29196189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 2074925 - 2074883
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||| |||||||||||||||| ||||||||||||||||    
T  2074925 atcatagttt-tattggtgtgattttgggtccgaattcacaaca 2074883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 40735707 - 40735750
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||| |||||||||||||||||||||  ||||||||||||||    
T  40735707 atcataatttgtattggtgtgattttgataccgaattcacaaca 40735750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 47304586 - 47304629
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||||| ||||||||| |||||||||||| ||||    
T  47304586 atcatagtttgtattgttgtgattttaagtccgaattcagaaca 47304629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 7764790 - 7764834
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtcc-gaattcacaaca 59  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||    
T  7764790 atcatagtttgtattggtgtagttttgagtccggaattcacaaca 7764834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 19683731 - 19683687
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtcc-gaattcacaaca 59  Q
    |||||||||||||||||||||| |||||| || ||||||||||||    
T  19683731 atcatagtttgtattggtgtgagtttgagaccggaattcacaaca 19683687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 23391756 - 23391712
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||| || |||||||||||||    
T  23391756 atcatagtttgtattggtgtgagttttgtgttcgaattcacaaca 23391712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 23410175 - 23410131
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  23410175 atcatagtttgtattgatgtgagttttgtgtccgaattcacaaca 23410131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 29811193 - 29811237
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||| ||||||||||||||| |||||||| |||||||||||||    
T  29811193 atcatattttgtattggtgtgagttttgagttcgaattcacaaca 29811237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 31340058 - 31340018
Alignment:
Q  19 atagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||| ||||||||| || ||||||||||    
T  31340058 atagtttgtattggtgtaattttgagtacgcattcacaaca 31340018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 39153208 - 39153164
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||    
T  39153208 atcatagtttgtattggtgtgagttttgagcccgaattctcaaca 39153164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 51351973 - 51351941
Alignment:
Q  27 tattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||| |||||||||||||||||||||||||||    
T  51351973 tattgatgtgattttgagtccgaattcacaaca 51351941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 51 - 476
Target Start/End: Complemental strand, 45765301 - 45764876
Alignment:
Q  51 ttcacaacactacgtatggtgagaaaaccttatgaggattgttgcaaagttaggatgattttgaaaggattaggcataagggttggtgagagagatgtgt 150  Q
    |||||||  ||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  45765301 ttcacaagcctacgtatggtgagataaacttatgaggattgttacaaagttaggatgattttgaaaggattaggcataagggttgatgaaagagatgtgt 45765202  T
Q  151 caatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcat 250  Q
    |||||||| || |||| |||||||| |||||||||||| |||||||| ||||||||| |||| |||||||||||||||| ||||||| |||||||| |||    
T  45765201 caatgcatttaggatttaaggaagaacttaaagagttatttggtgaatggtactatggtaaatgaggattaccaaaagtgtttattggaaagaaatacat 45765102  T
Q  251 tgttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggt 350  Q
    ||||  ||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  45765101 tgttggagttgaggaaatttagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaatgattgatgacattgaaggaggtgatggt 45765002  T
Q  351 ggatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataatt 450  Q
    |||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45765001 ggatgtgaggcctgtggtgatataaaatttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataatt 45764902  T
Q  451 gtgaggttggtgagtgtggattccaa 476  Q
    |||||||||||||| |||||||||||    
T  45764901 gtgaggttggtgagggtggattccaa 45764876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 152 - 490
Target Start/End: Original strand, 21857878 - 21858221
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| || ||||||| ||||||||| ||||||||||||||||| ||| | ||| |||| |||||||||||||||| ||||||| |||||||| ||||    
T  21857878 aatgcatttaggattcaaagaagagctttaagagttacttggtgaagggttccatggtaaaagaggattaccaaaagtgtttattgaaaagaaatacatt 21857977  T
Q  252 gttttagttgag-gaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggt 350  Q
    | |  |||| |  |||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| | |||||| ||||||||||||||    
T  21857978 ggtggagttaaaagaaattcagaaacttcatgatgacaagaagcttgaggaattgcttgatagttgtgaaaggattaatgacattaaaggaggtgatggt 21858077  T
Q  351 ggatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataatt 450  Q
    |||||||| | ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  21858078 ggatgtgagggttgtggtgatataaaatttgttccttgtgaaacatgttatgtaagttgtaaaatctactatgaaggtgattatgaagaagatgataatt 21858177  T
Q  451 gtgaggtt----ggtgagtgtggattccaaaggtgtcctcattg 490  Q
    ||||||||    |||||||||||||||||||||||| |||||||    
T  21858178 gtgaggttggcgggtgagtgtggattccaaaggtgttctcattg 21858221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 152 - 490
Target Start/End: Original strand, 21913741 - 21914084
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| || ||||||| ||||||||| ||||||||||||||||| ||| | ||| |||| |||||||||||||||| ||||||| |||||||| ||||    
T  21913741 aatgcatttaggattcaaagaagagctttaagagttacttggtgaagggttccatggtaaaagaggattaccaaaagtgtttattgaaaagaaatacatt 21913840  T
Q  252 gttttagttgag-gaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggt 350  Q
    | |  |||| |  |||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| | |||||| ||||||||||||||    
T  21913841 ggtggagttaaaagaaattcagaaacttcatgatgacaagaagcttgaggaattgcttgatagttgtgaaaggattaatgacattaaaggaggtgatggt 21913940  T
Q  351 ggatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataatt 450  Q
    |||||||| | ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  21913941 ggatgtgagggttgtggtgatataaaatttgttccttgtgaaacatgttatgtaagttgtaaaatctactatgaaggtgattatgaagaagatgataatt 21914040  T
Q  451 gtgaggtt----ggtgagtgtggattccaaaggtgtcctcattg 490  Q
    ||||||||    |||||||||||||||||||||||| |||||||    
T  21914041 gtgaggttggcgggtgagtgtggattccaaaggtgttctcattg 21914084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 163 - 490
Target Start/End: Complemental strand, 35194698 - 35194365
Alignment:
Q  163 gattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggatt----accaaaagtatttattgtaaagaaattcattgttttag 258  Q
    ||||||||||| |||||||| |||||||| ||||| ||||||||| ||||||||||||    | ||||||| ||| ||| |||||||| ||||| |  ||    
T  35194698 gattcaaggaatagcttaaatagttacttcgtgaagggtactatggtaaaggaggattgattatcaaaagtgttt-ttgaaaagaaatacattggtggag 35194600  T
Q  259 ttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtga 358  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||||||||| |||||||||    
T  35194599 ttgaggaaattcagaaacttcatgatgacaagaagtttgagaaattgctttattgttgtgaaaggattgatgatattgaaggaggtgatg-tggatgtga 35194501  T
Q  359 agcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggtt 458  Q
     ||||||||||||||||| |||||| |||||||||||||| ||| || ||||||||| |||||||||  |||||||||||||| ||||||||||||||||    
T  35194500 ggcttgtggtgatataaaatttgttgcttgtgaaacatgttatgaaaattgtaaaatatactatgaaagtgattatgaagaaggtgataattgtgaggtt 35194401  T
Q  459 ----ggtgagtgtggattccaaaggtgtcctcattg 490  Q
        |||||||||||||| ||||||||| |||||||    
T  35194400 gatgggtgagtgtggatttcaaaggtgttctcattg 35194365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 163 - 397
Target Start/End: Complemental strand, 12595219 - 12594983
Alignment:
Q  163 gattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcattgtttt---agt 259  Q
    |||||||| || |||||||| |||||||||||||| ||||||||| |||| ||||||||||||| || ||||||| |||||||| ||||| |     |||    
T  12595219 gattcaagtaaaagcttaaatagttacttggtgaagggtactatggtaaatgaggattaccaaatgtgtttattgaaaagaaatacattggtggtggagt 12595120  T
Q  260 tgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaa 359  Q
    |||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||||||||     
T  12595119 tgaggaaattcagaaacttcatgatggcaagaagcttgagaaattgcttg-ttgttgtgaaaggattaatgaaattgaaggaggtgatggtggatgtgag 12595021  T
Q  360 gcttgtggtgatataaagtttgttccttgtgaaacatg 397  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12595020 gcttgtggtgatataaagtttgttccttgtgaaacatg 12594983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 48893486 - 48893442
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacac 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  48893486 atcatagtttgtattggtgtgattttgagtccgaattcacaacac 48893442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 52095204 - 52095162
Alignment:
Q  17 tcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  52095204 tcatagtttgtattggtgtgattttgagtccgaattcacaaca 52095162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 56178479 - 56178438
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaa 57  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  56178479 atcatagtttgtattggtgtgattttgagtccgaattcacaa 56178438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 36463239 - 36463196
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  36463239 atcatagtttgtattagtgtgattttgagtccgaattcacaaca 36463196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 45687030 - 45686987
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  45687030 atcatagtttgtattggtgtgattttgagtctgaattcacaaca 45686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 52082506 - 52082463
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  52082506 atcataatttgtattggtgtgattttgagtccgaattcacaaca 52082463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 54199751 - 54199708
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  54199751 atcatcgtttgtattggtgtgattttgagtccgaattcacaaca 54199708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 26175480 - 26175435
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaacac 60  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  26175480 atcatagtttgtattggtgtgagttttgagtccgaattcacaacac 26175435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 48143373 - 48143418
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtcc-gaattcacaacac 60  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  48143373 atcatagtttgtattggtgtgattttgagtccggaattcacaacac 48143418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 12739397 - 12739353
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  12739397 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 12739353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 47038259 - 47038219
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcaca 56  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  47038259 atcatagtttgtattggtgtgattttgagtccaaattcaca 47038219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 5872145 - 5872183
Alignment:
Q  21 agtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  5872145 agtttgtattggtgtgattttgagtccggattcacaaca 5872183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 12743770 - 12743728
Alignment:
Q  18 catagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  12743770 catagtttgtattggtgtgagttttgagtccgaattcacaaca 12743728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 52467201 - 52467159
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaa 57  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  52467201 atcatagtttgtattggtgtgagttttgagtccgaattcacaa 52467159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5369925 - 5369881
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtcc-gaattcacaaca 59  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  5369925 atcatagtttgtattggtgtgattttgagaccggaattcacaaca 5369881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 29999672 - 29999628
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtcc-gaattcacaaca 59  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  29999672 atcatagtttgtattggtgtgattttgagaccggaattcacaaca 29999628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 36994854 - 36994898
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  36994854 atcatagtttgtattggtgtgagttttgagtcagaattcacaaca 36994898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 37740950 - 37740994
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||    
T  37740950 atcatagtttgtattggtgtgagttttgagtccgaatttacaaca 37740994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 3914044 - 3914079
Alignment:
Q  20 tagtttgtattggtgtgattttgagtccgaattcac 55  Q
    |||||||||||| |||||||||||||||||||||||    
T  3914044 tagtttgtattgatgtgattttgagtccgaattcac 3914079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 34570257 - 34570214
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||    
T  34570257 atcatagtttatattggtgtgattttgaatccgaattcgcaaca 34570214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 29254817 - 29254863
Alignment:
Q  16 atcatagtttgtattggtgtgattttgag-tccgaattcacaacact 61  Q
    ||||||||||||||| |||||||||| || |||||||||||||||||    
T  29254817 atcatagtttgtattagtgtgattttaagttccgaattcacaacact 29254863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 31474471 - 31474513
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacac 60  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||    
T  31474471 atcattgtttgtattggtgtgatt--gagtccgaattcacaacac 31474513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 9927302 - 9927258
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||| |||||||| || ||||||||||||||||||||||    
T  9927302 atcatagtttatattggtgcgagttttgagtccgaattcacaaca 9927258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 50262531 - 50262487
Alignment:
Q  16 atcatagtttgtattggtgtg-attttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||| | |||||||| ||||||||||||    
T  50262531 atcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 50262487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 63 - 490
Target Start/End: Original strand, 3377279 - 3377706
Alignment:
Q  63 cgtatggtgagaaaaccttatgaggattgttgcaaagttaggatgattttgaaaggattaggcataagggttggtgagagagatgtgtcaatgcatataa 162  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||     
T  3377279 cgtatggtgagaaaaacttatgaggattgttgcatagttaggatggttttgaaaggattaggcataagggttgatgagagagatgtgtcaatgcatttag 3377378  T
Q  163 gattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcattgttttagttga 262  Q
    |||| ||||||||||| |||||||||||||||||| || |||||| |||||| |||||||||||||| ||||||| || ||||| ||||| |  ||||||    
T  3377379 gatttaaggaagagctcaaagagttacttggtgaagggaactatggtaaaggtggattaccaaaagtgtttattggaaggaaatacattggtggagttga 3377478  T
Q  263 ggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagct 362  Q
    ||||||||| ||| | ||| |||| || ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  3377479 ggaaattcagaaattacatgatgataaaaagcttgagaaattatttgattgttgtgaaagagttgacgacattgaaggaggtgatggtggatgtgaggct 3377578  T
Q  363 tgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggttggtg 462  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||    
T  3377579 tgtggtgatataaagtttgttccttgtgaaaaatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgatgattatgaggttggtg 3377678  T
Q  463 agtgtggattccaaaggtgtcctcattg 490  Q
    |||||||||| |||||||||||||||||    
T  3377679 agtgtggatttcaaaggtgtcctcattg 3377706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 152 - 482
Target Start/End: Complemental strand, 32155147 - 32154813
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| || |||| ||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||||||||| ||| ||| |||||||| | ||    
T  32155147 aatgcatttaggatttaaggaagagcttaaagagttacttggtgaagagtactatggtaaaggatgattaccaaaagtgtttcttgaaaagaaatacgtt 32155048  T
Q  252 gttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtg 351  Q
    | |  ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||    
T  32155047 ggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaagatgtgatggtg 32154948  T
Q  352 gatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattg 451  Q
    ||||||| |||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32154947 gatgtgaggcttgtggtgatataaagttcgttccttatgaaacatgttatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattg 32154848  T
Q  452 tgaggtt----ggtgagtgtggattccaaaggtgt 482  Q
    |||||||    ||||||||||||||||||||||||    
T  32154847 tgaggttggtgggtgagtgtggattccaaaggtgt 32154813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 164 - 472
Target Start/End: Original strand, 14608320 - 14608631
Alignment:
Q  164 attcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcattgttttagttgag 263  Q
    |||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||| ||| |||||||| ||||  |  |||| ||    
T  14608320 attcaaggaagagcttaaagagttacttggtgaaggatactatggtaaaggaggattaccaaaagtgttttttgaaaagaaatacatttgtggagtt-ag 14608418  T
Q  264 gaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagctt 363  Q
    |||||||| | ||||  | ||||||||||| ||||||||||||| |||| ||||||||||||| || |||||||||||||||||||||||||||| ||||    
T  14608419 gaaattcagagactttgtgatgacaagaagtttgagaaattgctcgattattgtgaaaggattaacaacattgaaggaggtgatggtggatgtgaggctt 14608518  T
Q  364 gtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggtt----g 459  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||    |    
T  14608519 gtggtgatataaaatttgttccttgtgaaacatgttatggaagttgtaaaatctactatggaggtgattataaagaagatgataattgtgaggttagtgg 14608618  T
Q  460 gtgagtgtggatt 472  Q
    |||||||||||||    
T  14608619 gtgagtgtggatt 14608631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 26954134 - 26954088
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacacta 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26954134 atcatagtttgtattggtgtgattttgagtccgaattcacaacacta 26954088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 28137253 - 28137210
Alignment:
Q  17 tcatagtttgtattggtgtgattttgagtccgaattcacaacac 60  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  28137253 tcatagtttgtattggtgtgattttgagaccgaattcacaacac 28137210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 602947 - 602903
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  602947 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 602903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 3038770 - 3038729
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaa 57  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  3038770 atcatagtttgtattggtctgattttgagttcgaattcacaa 3038729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 16569357 - 16569390
Alignment:
Q  27 tattggtgtgattttgagtccgaattcacaacac 60  Q
    ||||||||||||||||||||||||||||||||||    
T  16569357 tattggtgtgattttgagtccgaattcacaacac 16569390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 22963552 - 22963508
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtc-cgaattcacaaca 59  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  22963552 atcatagtttgtattggtgtgattttgagtctggaattcacaaca 22963508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 23824841 - 23824885
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtc-cgaattcacaaca 59  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  23824841 atcatagtttgtattggtgtgattttgagtctggaattcacaaca 23824885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 257277 - 257245
Alignment:
Q  27 tattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||| |||||||||||||    
T  257277 tattggtgtgattttgagttcgaattcacaaca 257245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 16452171 - 16452127
Alignment:
Q  16 atcatagtttgtattggtgtgattttgag-tccgaattcacaaca 59  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||    
T  16452171 atcatagttcgtattggtgtgattttgagatcggaattcacaaca 16452127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 51 - 422
Target Start/End: Original strand, 21361875 - 21362246
Alignment:
Q  51 ttcacaacactacgtatggtgagaaaaccttatgaggattgttgcaaagttaggatgattttgaaaggattaggcataagggttggtgagagagatgtgt 150  Q
    |||||||  ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  21361875 ttcacaagcctacgcatggtgagaaaaacttatgagaattgttgcaaagttaggatgattttgaaaggattaggcataagggttgatgagagatatgtgt 21361974  T
Q  151 caatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcat 250  Q
    |||| ||| || ||||||| |||||| | |||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||| |||||||  |||    
T  21361975 caatacatttaggattcaatgaagagttaaaagagttacttggtggagggtactatggtaaaggaggattaccaaaagtgtttattggaaagaaaaacat 21362074  T
Q  251 tgttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggt 350  Q
    || |  ||||||||||||||| ||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  21362075 tgctggagttgaggaaattcagaaacttcatgatgacaagaagcttgagtaattacttgattgttgtgaaaggattgacgacattgaaggaggtgatagt 21362174  T
Q  351 ggatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactat 422  Q
    |||||||| ||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  21362175 ggatgtgaggcttgtggtgatataaagtttgttcgttgtgaaacgtgttatggaagttgtaaaatctactat 21362246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 163 - 482
Target Start/End: Original strand, 13544836 - 13545159
Alignment:
Q  163 gattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcattgttttagttga 262  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| ||| |||| ||||| |  ||||||    
T  13544836 gattcaaggaagagcttaaagagttacttggtgaagggtactatggtaaaggaggattaccaaaagtgtttattgaaaaaaaatacattggtagagttga 13544935  T
Q  263 ggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagct 362  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |   |||||||||| |||    
T  13544936 ggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggaggaggcagtggatgtgaggct 13545035  T
Q  363 tgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggtt---- 458  Q
    || |||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||        
T  13545036 tgcggtgatataaagtttgttccttctgaaccatgttatggaagttgtaaaatctactatgaagatgattatgaaaaagatgataattgtgaggttggtg 13545135  T
Q  459 ggtgagtgtggattccaaaggtgt 482  Q
    ||||||||||||||||||||||||    
T  13545136 ggtgagtgtggattccaaaggtgt 13545159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 152 - 490
Target Start/End: Original strand, 27341433 - 27341775
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| || |||||||||||||||||||||||||||||||||||  |||||||| |||| ||||||| |||||||| ||||||| |||||||| ||||    
T  27341433 aatgcatttaggattcaaggaagagcttaaagagttacttggtgaagagtactatggtaaaagaggattgccaaaagtgtttattgaaaagaaatacatt 27341532  T
Q  252 gttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtg 351  Q
    | |  ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||    
T  27341533 ggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggatttatgacattgaaggaggtgatgatg 27341632  T
Q  352 gatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattg 451  Q
    ||||||| ||||||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  27341633 gatgtgaggcttgtggtaatataaagtttgttccctatgaaacatgttatggaagttgtaaaatctactatgaaggtgaatatgaagaagatgataattg 27341732  T
Q  452 tgaggttgg----tgagtgtggattccaaaggtgtcctcattg 490  Q
    |||||||||    |||||||||||||||||| ||| |||||||    
T  27341733 tgaggttggtggatgagtgtggattccaaagatgttctcattg 27341775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 160 - 482
Target Start/End: Complemental strand, 25456188 - 25455861
Alignment:
Q  160 taagattcaa-ggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcattgttttag 258  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||| |||||||| ||||| || ||    
T  25456188 taagattcaaaggaagagcttaaagagttacttggtgaagggtactatggtaaatgaggattaccaaaagtgtttattgaaaagaaatacattggttgag 25456089  T
Q  259 ttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtga 358  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  25456088 ttgaggaaattcagaaagttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatggcattaaaggaggtgatggtggatgtga 25455989  T
Q  359 agcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggtt 458  Q
     |  ||||||||||||||||||||||||||| ||||||   |||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  25455988 gggatgtggtgatataaagtttgttccttgtaaaacattctatggaagttgtaaaatatactatgaaggtgattatgaagaagataataattgtgaggtt 25455889  T
Q  459 ----ggtgagtgtggattccaaaggtgt 482  Q
        |||| |||||||||||||||||||    
T  25455888 tgtgggtgggtgtggattccaaaggtgt 25455861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 152 - 480
Target Start/End: Original strand, 38424369 - 38424698
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||| ||| |||||||| ||||    
T  38424369 aatgcatttaggattcaaggaatagcttaaagagttacttggtgaagggtactatggtaaaggaggattatcaaaagtgttttttgaaaagaaatacatt 38424468  T
Q  252 gttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtg 351  Q
    | |  |||| |||||||||| |||||||||  |||||||||||||||||||| ||||  |||||||||||||||||| ||||||||||||||||||||||    
T  38424469 ggtggagttaaggaaattcagaaacttcatgttgacaagaagcttgagaaatcgcttttttgttgtgaaaggattgatgacattgaaggaggtgatggtg 38424568  T
Q  352 gatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattg 451  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||   ||||||||    
T  38424569 gatgtgaggcttgtggtgatataaagtttgttccttgtgaaacatgttatggaaattgtaaaatctactatgaaggtgattatgaagaa---gataattg 38424665  T
Q  452 tgaggtt----ggtgagtgtggattccaaaggt 480  Q
    |||||||    ||||||||| ||||||||||||    
T  38424666 tgaggttggtgggtgagtgttgattccaaaggt 38424698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 152 - 358
Target Start/End: Original strand, 27188178 - 27188384
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||| |||||||| ||||    
T  27188178 aatgcatttaggattcaaggaagagcttaaagagttacttggtgaagggtactatggtaaaggaagattaccaaaagtgtttattgaaaagaaatacatt 27188277  T
Q  252 gttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtg 351  Q
    | |  ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  27188278 ggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattaatgacattgaaggaggtgatggtg 27188377  T
Q  352 gatgtga 358  Q
    |||||||    
T  27188378 gatgtga 27188384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 27188390 - 27188483
Alignment:
Q  400 atggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggtt----ggtgagtgtggattccaaaggtgtcctcatt 489  Q
    |||||||| |||||||||| ||||||| |||||||||||||||||||||||||| ||||    ||||| |||||||||||||||||| ||||||    
T  27188390 atggaagtagtaaaatctattatgaaggtgattatgaagaagatgataattgtgtggttggtgggtgattgtggattccaaaggtgttctcatt 27188483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5887278 - 5887235
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5887278 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 5887235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 31183298 - 31183341
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  31183298 atcatggtttgtattggtgtgattttgagtccgaattcacaaca 31183341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 40147566 - 40147611
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaacac 60  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  40147566 atcatagtttgtattggtgtgagttttgagtccgaattcacaacac 40147611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 16649678 - 16649635
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  16649678 atcatagtttgtattggtatgattttgagttcgaattcacaaca 16649635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 33832003 - 33832046
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||| |||| |||||||||||||||||||||||    
T  33832003 atcatagtttgtatttgtgtaattttgagtccgaattcacaaca 33832046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 13240076 - 13240118
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaac 58  Q
    ||||||||||||||| |||||||||||||| ||||||||||||    
T  13240076 atcatagtttgtattagtgtgattttgagttcgaattcacaac 13240118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 534083 - 534127
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||    
T  534083 atcatagtttctattggtgtgagttttgagtccgaattcacaaca 534127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 3075593 - 3075549
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  3075593 atcatagtttgtattggtgtgagtttttagtccgaattcacaaca 3075549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 30682766 - 30682722
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||    
T  30682766 atcatagtttgtattggtgtgagttttgagtccgtattcacaaca 30682722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 19806687 - 19806729
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||| | ||||||||||||||||||||||    
T  19806687 atcatagtttgtattggtgag-ttttgagtccgaattcacaaca 19806729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 28750499 - 28750452
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaacacta 62  Q
    |||||| ||||||||||||||| |||||||||| ||||||||||||||    
T  28750499 atcataatttgtattggtgtgagttttgagtccaaattcacaacacta 28750452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 8565791 - 8565745
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacacta 62  Q
    |||||||||| |||| |||||||||||| ||| ||||||||||||||    
T  8565791 atcatagtttatattagtgtgattttgaatccaaattcacaacacta 8565745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 32637148 - 32637190
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaa 57  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  32637148 atcatagtttgtattggtgtgagttttgaatccgaattcacaa 32637190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 13488525 - 13488570
Alignment:
Q  16 atcatagtttgtattggtgtgat-tttgagtccgaattcacaacac 60  Q
    |||||| |||||||||||||||  ||||||||||||||||||||||    
T  13488525 atcatattttgtattggtgtgagatttgagtccgaattcacaacac 13488570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 490
Target Start/End: Original strand, 21362249 - 21362282
Alignment:
Q  457 ttggtgagtgtggattccaaaggtgtcctcattg 490  Q
    ||||||||||||||||| ||||||||||||||||    
T  21362249 ttggtgagtgtggattctaaaggtgtcctcattg 21362282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 30182913 - 30182957
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtcc-gaattcacaaca 59  Q
    |||||||||||| |||||||||||||||| || ||||||||||||    
T  30182913 atcatagtttgttttggtgtgattttgagaccggaattcacaaca 30182957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 38747309 - 38747353
Alignment:
Q  16 atcatagtttgtattggtgtg-attttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||| | ||||||||| |||||||||||    
T  38747309 atcatagtttgtattggtgtgaaatttgagtccaaattcacaaca 38747353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 39468392 - 39468348
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||| | |||||||| |||||||||||||    
T  39468392 atcatagtttgtattggtgtaagttttgagttcgaattcacaaca 39468348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 42426079 - 42426035
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    ||||||||||||||| |||||| |||||||| |||||||||||||    
T  42426079 atcatagtttgtatttgtgtgagttttgagttcgaattcacaaca 42426035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 152 - 490
Target Start/End: Original strand, 30022657 - 30022999
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| || |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||  |||||| || ||||| ||||    
T  30022657 aatgcatttaggattcaaggaagagtttaaagagttacttggtgaatggtactatggtaaaggaggattaccaaaagtgcttattgaaatgaaatacatt 30022756  T
Q  252 gttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtg 351  Q
    | |  ||||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||    
T  30022757 ggtggagttgaggaaattcagaaacttcatgatgacaagaaacttgagaaattacttgattgttgtgaaaggattaatgacattgaaggaggtgatggtg 30022856  T
Q  352 gatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattg 451  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30022857 gatgtgaggcttgtggtgatataaagtttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattg 30022956  T
Q  452 tgaggtt----ggtgagtgtggattccaaaggtgtcctcattg 490  Q
    |||||||    |||||||||||||| ||||||||| |||||||    
T  30022957 tgaggtttgtgggtgagtgtggatttcaaaggtgttctcattg 30022999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 152 - 490
Target Start/End: Complemental strand, 21387072 - 21386730
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| |  |||||| ||||||||||||||||||||| ||||||| |||||||| ||||    
T  21387072 aatgcatttatgattcaaggaagagcttaaagagttacttggtgaaggaaactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacatt 21386973  T
Q  252 gttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtg 351  Q
    | |  ||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||||||||    
T  21386972 ggtggagttgaggaaatttagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaatgattaatggcattgaaggaggtgatggtg 21386873  T
Q  352 gatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattg 451  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||    
T  21386872 gatgtgaggcttgtggtgatatcaagtttgtttcttgtgaaacatgttatggaagttgtaaaatctactatgaaggtaattacgaagaagatgataattg 21386773  T
Q  452 tgaggtt----ggtgagtgtggattccaaaggtgtcctcattg 490  Q
    |||||||    ||||||| |||||||||||||||| |||||||    
T  21386772 tgaggttggtgggtgagtatggattccaaaggtgttctcattg 21386730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 163 - 444
Target Start/End: Original strand, 29644417 - 29644698
Alignment:
Q  163 gattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcattgttttagttga 262  Q
    ||||||||||| || |||||||||||||||||||| ||||||||| ||||||||||||||||||| | ||||||| |||||||| ||||| |  ||||||    
T  29644417 gattcaaggaatagtttaaagagttacttggtgaagggtactatggtaaaggaggattaccaaaattgtttattgaaaagaaatacattgatgaagttga 29644516  T
Q  263 ggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagct 362  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||    
T  29644517 ggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggagatgatggtggatttgaggct 29644616  T
Q  363 tgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatg 444  Q
    ||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  29644617 tgtcgtgacataaattttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatg 29644698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 163 - 490
Target Start/End: Complemental strand, 33697164 - 33696842
Alignment:
Q  163 gattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcattgttttagttga 262  Q
    |||||||||||||| ||||||| |||||||||||| | ||||||  |||||||| ||||| |||||| ||||||| |||||||| ||||| |  ||||||    
T  33697164 gattcaaggaagagtttaaagaattacttggtgaaggatactatagtaaaggagaattacaaaaagtgtttattgaaaagaaatacattggtggagttga 33697065  T
Q  263 ggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagct 362  Q
    |         ||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| |||||| |||||| |||| |||    
T  33697064 g---------aaacttcatgatgacaagaagcttgagaaattgtttgattgttgtgaaaggagtgatgacattgaagtaggtgaaggtggacgtgaggct 33696974  T
Q  363 tgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggtt---- 458  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        
T  33696973 tgtggtgatataaagtttgttccttgttaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtg 33696874  T
Q  459 ggtgagtgtggattccaaaggtgtcctcattg 490  Q
    ||||||||||||||| |||||||| |||||||    
T  33696873 ggtgagtgtggattctaaaggtgttctcattg 33696842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 347 - 429
Target Start/End: Original strand, 2373011 - 2373093
Alignment:
Q  347 tggtggatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatg 429  Q
    ||||||||||||   |||||||||||||| |||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  2373011 tggtggatgtgagaattgtggtgatataaggtttgttccttgtgaaacttgttttggaagttgtaaaatctactatgaagatg 2373093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 2372744 - 2372854
Alignment:
Q  68 ggtgagaaaaccttatgaggattgttgcaaagttaggatgattttgaaaggattaggcataagggttggtgagagagatgtgtcaatgcatataagattc 167  Q
    |||||||||  ||||||| ||||||||| |||| ||||||||||||| ||| |||||  | || |||| |||||||||||| ||||||||| || |||||    
T  2372744 ggtgagaaagacttatgaagattgttgccaagtaaggatgattttgagagggttaggagtgagagttgatgagagagatgtatcaatgcatttaggattc 2372843  T
Q  168 aaggaagagct 178  Q
    ||||| |||||    
T  2372844 aaggaggagct 2372854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 38671068 - 38671022
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacacta 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38671068 atcatagtttgtattggtgtgattttgagtccgaattcacaacacta 38671022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 41648857 - 41648814
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41648857 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 41648814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 48489756 - 48489798
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaac 58  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  48489756 atcatagttggtattggtgtgattttgagtccgaattcacaac 48489798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 6430452 - 6430496
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  6430452 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 6430496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 14069677 - 14069633
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  14069677 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 14069633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 14379705 - 14379661
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  14379705 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 14379661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 18126971 - 18127015
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  18126971 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 18127015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 23555366 - 23555410
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  23555366 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 23555410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 26417641 - 26417685
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  26417641 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 26417685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 8153662 - 8153705
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||| |||||||||||||||||||||| |||||    
T  8153662 atcatagtttgtattagtgtgattttgagtccgaattcccaaca 8153705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 25616180 - 25616223
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  25616180 atcatagtttgtattggtgtgattttgagtacgtattcacaaca 25616223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 27348142 - 27348185
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||| |||||||| ||||||||||||||||||||||||||||    
T  27348142 atcataatttgtatttgtgtgattttgagtccgaattcacaaca 27348185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 36146255 - 36146212
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||| |||| |||||||||||||||||||||||    
T  36146255 atcatagtttgtatttgtgtaattttgagtccgaattcacaaca 36146212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 30024605 - 30024559
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacacta 62  Q
    |||||||||| ||||||| |||||||||||||||||| |||||||||    
T  30024605 atcatagtttatattggtatgattttgagtccgaatttacaacacta 30024559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 42491283 - 42491215
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggatta 221  Q
    ||||||| || ||||||||||||| |||||| ||||| |||||||| | ||||||| |||||||||||||    
T  42491283 aatgcatttaggattcaaggaagaacttaaa-agttagttggtgaaggatactatggtaaaggaggatta 42491215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 48491904 - 48491945
Alignment:
Q  19 atagtttgtattggtgtgattttgagtccgaattcacaacac 60  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  48491904 atagttggtattggtgtgattttgaatccgaattcacaacac 48491945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 4510383 - 4510339
Alignment:
Q  16 atcatagtttgtattggtgtg-attttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  4510383 atcatagtttgtattggtgtgaaatttgagtccgaattcacaaca 4510339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 4512225 - 4512181
Alignment:
Q  16 atcatagtttgtattggtgtg-attttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  4512225 atcatagtttgtattggtgtgaaatttgagtccgaattcacaaca 4512181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 31732812 - 31732768
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||    
T  31732812 atcatagtttgtactggtgtgagttttgagtccgaattcacaaca 31732768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 43864569 - 43864609
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcac 55  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  43864569 atcatagtttgtattggtgtgagttttgagtccgaattcac 43864609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 47675980 - 47675936
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  47675980 atcatagtttgtattggtgtgagttttgtgtccgaattcacaaca 47675936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 2360816 - 2360774
Alignment:
Q  16 atcatagtttgtattggtgtg-attttgagtccgaattcacaa 57  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  2360816 atcatagtttgtattggtgtgaattttgagtccaaattcacaa 2360774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 12097008 - 12096969
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcaca 56  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  12097008 atcatagtttatat-ggtgtgattttgagtccgaattcaca 12096969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 19502503 - 19502547
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    ||||||||||||||| |||||| ||||||||| ||||||||||||    
T  19502503 atcatagtttgtattagtgtgagttttgagtctgaattcacaaca 19502547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 24525349 - 24525305
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacac 60  Q
    |||||||||||||||| ||||||||||| |  |||||||||||||    
T  24525349 atcatagtttgtattgatgtgattttgaatttgaattcacaacac 24525305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 41317282 - 41317238
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||  ||||||| |||||||||||||    
T  41317282 atcatagtttgtattggtgtgagatttgagttcgaattcacaaca 41317238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 47673788 - 47673744
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||    
T  47673788 atcatagtttgtattggtgtgagttttgtgtccgaattcataaca 47673744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 152 - 462
Target Start/End: Original strand, 14252129 - 14252439
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||| ||||||| |||||||| ||||    
T  14252129 aatgcatttaagattcaaagaatagcttaaagagttacttggtgaagggtactatggtaaatgaggattacaaaaagtgtttattgaaaagaaatacatt 14252228  T
Q  252 gttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtg 351  Q
    | |  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  14252229 ggtggagttgaggaaattcaaaaacttcatgatgacaagaagcttgagaaattgcttgatcgttgtgaaaggattgatgacattgaaggaggtgatggtg 14252328  T
Q  352 gatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattg 451  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  14252329 gatgtgaggcttgtggtgatataaagtttgttccttgtgaaacatatcataaaagttgtaaaatctactataaaggtgattatgaagaagatgataattg 14252428  T
Q  452 tgaggttggtg 462  Q
    |||||||||||    
T  14252429 tgaggttggtg 14252439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 152 - 482
Target Start/End: Complemental strand, 10317534 - 10317201
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||| ||||||| |||||| | ||||    
T  10317534 aatgcatttaaaattcaaggaagagcttaaagagttacttggtgaagggtactatggtaaaggaggattaataaaagtgtttattgaaaagaagtacatt 10317435  T
Q  252 gttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtg 351  Q
    | |  ||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  10317434 ggtggagttgagaaaattcagaaacttcatgatgacaaaaagcttgagaaattgcttgattgttgtgaaaggattgatggcattgaaggaggtgatggtg 10317335  T
Q  352 gatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattg 451  Q
    ||| ||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  10317334 gat-tgaggcttatggtgatataaagtttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtaattatgaagaagatgataattg 10317236  T
Q  452 tgaggtt----ggtgagtgtggattccaaaggtgt 482  Q
    |||||||    ||||||||||||||||||||||||    
T  10317235 tgaggtttgtgggtgagtgtggattccaaaggtgt 10317201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 152 - 452
Target Start/End: Original strand, 5607061 - 5607361
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| || |||||||| |||| ||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||| ||| ||||   ||    
T  5607061 aatgcatttaggattcaagaaagaacttaaagagttacttggtgaaggatactatggtaaaggaggattaccaaaagtgtttattgaaaataaataagtt 5607160  T
Q  252 gttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtg 351  Q
    | |  ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  5607161 ggtggagttgaggaaattcagaaacttcatgataacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaagacggtgatggtg 5607260  T
Q  352 gatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattg 451  Q
    |||||||  |||| |||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  5607261 gatgtgagacttgcggtgatataaagcttgttccttgtgaaacatgttttggaagttgtaaaatctactatgaaggtaattatgaagaaaatgataattg 5607360  T
Q  452 t 452  Q
    |    
T  5607361 t 5607361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 152 - 490
Target Start/End: Original strand, 9758553 - 9758883
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| || |||||||||||||| |||||||||||||||  |||  |||||||| ||||||||||||||||||||| ||||||| |||||||| | ||    
T  9758553 aatgcatttaggattcaaggaagagtttaaagagttacttgacgaagagtactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacgtt 9758652  T
Q  252 gttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtg 351  Q
    | |  ||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||            |    
T  9758653 ggtggagttgagaaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgatttttgtgaaaggattgatgacattgaa------------g 9758740  T
Q  352 gatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattg 451  Q
    ||||| | ||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9758741 gatgtcaggcttgtgctgatataaagtttgttccttatgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattg 9758840  T
Q  452 tgaggtt----ggtgagtgtggattccaaaggtgtcctcattg 490  Q
     ||||||    |||||||||||||||||||||||| |||||||    
T  9758841 cgaggttggtgggtgagtgtggattccaaaggtgttctcattg 9758883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 265 - 482
Target Start/End: Complemental strand, 10316376 - 10316155
Alignment:
Q  265 aaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagcttg 364  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||| |||||    
T  10316376 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattattgtgaatggattgatggcattgaaggaggtgatggtggatgtgaggcttg 10316277  T
Q  365 tggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggtt----gg 460  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||    
T  10316276 tggtgatataaagtttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggtttgtggg 10316177  T
Q  461 tgagtgtggattccaaaggtgt 482  Q
    ||||||||||||||||||||||    
T  10316176 tgagtgtggattccaaaggtgt 10316155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 265 - 482
Target Start/End: Complemental strand, 10315648 - 10315427
Alignment:
Q  265 aaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagcttg 364  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||| |||||    
T  10315648 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaatgattgatggcattgaaagaggtgatggtggatgtgaggcttg 10315549  T
Q  365 tggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggtt----gg 460  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    ||    
T  10315548 tggtgatattaagtttgttccttgtgaaacatgttatggaagttgtaaaatctacgatgaaggtgattatgaagaagatgataattgtgaggtttgtggg 10315449  T
Q  461 tgagtgtggattccaaaggtgt 482  Q
    ||||| ||||||||||||||||    
T  10315448 tgagtatggattccaaaggtgt 10315427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 265 - 482
Target Start/End: Complemental strand, 10316012 - 10315791
Alignment:
Q  265 aaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagcttg 364  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||| |||||| |||||||||  |||     
T  10316012 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattattgtgaatggattgatggcattgaaggatgtgatgttggatgtgagactta 10315913  T
Q  365 tggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggtt----gg 460  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||    
T  10315912 tggtgatataaagtttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggtttgtggg 10315813  T
Q  461 tgagtgtggattccaaaggtgt 482  Q
    ||||||||||||||||||||||    
T  10315812 tgagtgtggattccaaaggtgt 10315791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 265 - 482
Target Start/End: Complemental strand, 10317058 - 10316837
Alignment:
Q  265 aaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagcttg 364  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||||||||| |||||||||| |||||    
T  10317058 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattattgtgaatggattgatggcattgaaggaggtgattgtggatgtgaggcttg 10316959  T
Q  365 tggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggtt----gg 460  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||    
T  10316958 tggtgatataaagtttgttccttgcgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggtttgtggg 10316859  T
Q  461 tgagtgtggattccaaaggtgt 482  Q
    ||||||| ||||||| ||||||    
T  10316858 tgagtgtcgattccacaggtgt 10316837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 265 - 435
Target Start/End: Complemental strand, 10316701 - 10316531
Alignment:
Q  265 aaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagcttg 364  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||  |||||| ||||||| | ||||||||||||||||||||||||||| |||||    
T  10316701 aaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattactgtgaatggattgatggcattgaaggaggtgatggtggatgtgaggcttg 10316602  T
Q  365 tggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatg 435  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  10316601 tggtgatataaagtttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtgattatg 10316531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 24885910 - 24885955
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacact 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24885910 atcatagtttgtattggtgtgattttgagtccgaattcacaacact 24885955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 42362670 - 42362714
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacac 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42362670 atcatagtttgtattggtgtgattttgagtccgaattcacaacac 42362714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 723590 - 723547
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  723590 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 723547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 34139616 - 34139573
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34139616 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 34139573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 36987918 - 36987875
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  36987918 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 36987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 36773883 - 36773929
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacacta 62  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  36773883 atcatagtttgtattggtgtgattttgaatccgaattcacaacacta 36773929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 33162297 - 33162252
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacact 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  33162297 atcatagtttgtattgatgtgattttgagtccgaattcacaacact 33162252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 6594847 - 6594803
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacac 60  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  6594847 atcatagtttgtattggtgtgattttgagtccaaattcacaacac 6594803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 2334261 - 2334218
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  2334261 atcatagtttgtattggtgtgattttgagtctgaattcacaaca 2334218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 17057212 - 17057169
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  17057212 atcatattttgtattggtgtgattttgagtccgaattcacaaca 17057169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 17085195 - 17085152
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  17085195 atcatattttgtattggtgtgattttgagtccgaattcacaaca 17085152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 11690812 - 11690856
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  11690812 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 11690856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 14633671 - 14633628
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||    
T  14633671 atcatagtttgtattggtgtgattttgagtctgaaatcacaaca 14633628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 14202267 - 14202224
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||| ||||| ||||||||| |||||||||||||||    
T  14202267 atcatagtttgtgttggtatgattttgactccgaattcacaaca 14202224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 26354134 - 26354176
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  26354134 atcatagttt-tattggtgtgattttgagtccgaattcataaca 26354176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 13122084 - 13122124
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaa 57  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  13122084 atcatagttt-tattggtgtgattttgtgtccgaattcacaa 13122124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 29868193 - 29868238
Alignment:
Q  16 atcatagtttgtattggtgtgat-tttgagtccgaattcacaacac 60  Q
    |||||||||||||||| |||||  ||||||||||||||||||||||    
T  29868193 atcatagtttgtattgctgtgaaatttgagtccgaattcacaacac 29868238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 11151439 - 11151395
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||| ||| |||||||| |||||||||||||    
T  11151439 atcatagtttgtattggtatgagttttgagttcgaattcacaaca 11151395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 28672196 - 28672228
Alignment:
Q  27 tattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||| |||||||||||||    
T  28672196 tattggtgtgattttgagtacgaattcacaaca 28672228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 36205508 - 36205464
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtcc-gaattcacaaca 59  Q
    ||||||||||||||| ||||||||||||| || ||||||||||||    
T  36205508 atcatagtttgtattagtgtgattttgagaccggaattcacaaca 36205464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 36317857 - 36317813
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    ||||| |||||||||||||||| |||||||||| |||||||||||    
T  36317857 atcattgtttgtattggtgtgagttttgagtccaaattcacaaca 36317813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 163 - 482
Target Start/End: Original strand, 43214749 - 43215072
Alignment:
Q  163 gattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcattgttttagttga 262  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||  ||| ||||||||||||||||| ||||||  |||||||| ||||| |  ||||||    
T  43214749 gattcaaggaaaagcttaaagagttacttggtgaaggatactattgtaatggaggattaccaaaagtgtttattaaaaagaaatacattggtggagttga 43214848  T
Q  263 ggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagct 362  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||    
T  43214849 ggaaattcagaaacttcatgatgacaagaagcttgagaaattgtttgattgttgtgaaaggattgaggacattgaaggaggtgacggtggatgtaaagct 43214948  T
Q  363 tgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggttgg-- 460  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||      
T  43214949 tgtggtgatataaagtttgttccttgtgaaacatgttgtggaagttgtaaaatctactatgaaggtgattatgaagaagatggtaattgtgaggttggtg 43215048  T
Q  461 --tgagtgtggattccaaaggtgt 482  Q
      ||||||||||||||||||||||    
T  43215049 gatgagtgtggattccaaaggtgt 43215072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 152 - 490
Target Start/End: Original strand, 22388604 - 22388946
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| || |||||||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||| |||| || |||||||| ||||    
T  22388604 aatgcatttaggattcaaggaagagtttaaagagttacttggtgaagggtactatggtagaggaggattaccaaaagtgtttagtgaaaagaaatacatt 22388703  T
Q  252 gttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtg 351  Q
    | |  ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  22388704 ggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggaggtgatagtg 22388803  T
Q  352 gatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattg 451  Q
    ||||||  | |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||  || |||||||||||||||||||||    
T  22388804 gatgtggggtttgtggtgatataaagtttgttccttctgaaacatgttatgaaagttgtaaaatctactatgaatgtggttatgaagaagatgataattg 22388903  T
Q  452 tgaggtt----ggtgagtgtggattccaaaggtgtcctcattg 490  Q
    |||||||    ||||||||||||||||||| |||| |||||||    
T  22388904 tgaggttggtgggtgagtgtggattccaaatgtgttctcattg 22388946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 163 - 462
Target Start/End: Original strand, 44209365 - 44209664
Alignment:
Q  163 gattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcattgttttagttga 262  Q
    ||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||| ||||||| |||||||| | ||| |  ||||||    
T  44209365 gattcaaggaatagcttaaagagttacttggtgaagagtactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacgttggtggagttga 44209464  T
Q  263 ggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagct 362  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||    
T  44209465 ggaaattcagaaacttcatgatggcaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggaggtgatggtggatgcgaggct 44209564  T
Q  363 tgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggttggtg 462  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  44209565 tgtggtgatataaagtttgttccttatgaaacatgttatggaagttgtaaaatctactatgacggtgattatgaagaagatgataattgcgaggttggtg 44209664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 163 - 489
Target Start/End: Original strand, 32814499 - 32814829
Alignment:
Q  163 gattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcattgttttagttga 262  Q
    ||||||||||||||||||||||||||| |||||||   ||||| | ||||||||||||||||||||| ||||||| |||||||| ||||| |  ||||||    
T  32814499 gattcaaggaagagcttaaagagttacctggtgaagaatactacggtaaaggaggattaccaaaagtgtttattgaaaagaaatacattggtggagttga 32814598  T
Q  263 ggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagct 362  Q
    ||||||||| ||| ||||| |||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||    
T  32814599 ggaaattcagaaatttcatgatgacaagaaacttgagaaattgtttgattgttgtgaaaggattgatgacattgaaggaggtgatggttgatgtgaggct 32814698  T
Q  363 tgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggtt---- 458  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||        
T  32814699 tgtggtgatataaagtttgttccttgttaaacatgttatgtaagttgtaaaatctactatgaaggtgattacgaagaagatggtaattgtgaggttggtg 32814798  T
Q  459 ggtgagtgtggattccaaaggtgtcctcatt 489  Q
    |||||||||||||| ||||||||| ||||||    
T  32814799 ggtgagtgtggatttcaaaggtgttctcatt 32814829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 296 - 462
Target Start/End: Original strand, 44209675 - 44209841
Alignment:
Q  296 tgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgtgaagcttgtggtgatataaagtttgttccttgtgaaaca 395  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||    
T  44209675 tgagaaattgcttgattgttgtgaaaggattgatgacattgaaggaggtgatggtggatgcgaggcttgtggtgatataaagtttgttccttatgaaaca 44209774  T
Q  396 tgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgaggttggtg 462  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44209775 tgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtg 44209841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 834013 - 833969
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacac 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  834013 atcatagtttgtattggtgtgattttgagtccgaattcacaacac 833969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 37503405 - 37503361
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacac 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37503405 atcatagtttgtattggtgtgattttgagtccgaattcacaacac 37503361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 8550627 - 8550584
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8550627 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 8550584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 40122044 - 40122001
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40122044 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 40122001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 1833831 - 1833876
Alignment:
Q  14 agatcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  1833831 agatcatagtttgtattggtgtgatattgagtccgaattcacaaca 1833876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 45644201 - 45644156
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacact 61  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  45644201 atcatagtttgtatttgtgtgattttgagtccgaattcacaacact 45644156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 28265402 - 28265359
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  28265402 atcatagtttgtattggtgtgattttgagtccgaattcccaaca 28265359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 44455485 - 44455528
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  44455485 atcatagtttgtattggtgtgattttgagtacgaattcacaaca 44455528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 10925549 - 10925590
Alignment:
Q  18 catagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  10925549 catagtttgtattgttgtgattttgagtccgaattcacaaca 10925590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 37282530 - 37282493
Alignment:
Q  27 tattggtgtgattttgagtccgaattcacaacactacg 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37282530 tattggtgtgattttgagtccgaattcacaacactacg 37282493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 28220070 - 28220026
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  28220070 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 28220026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 3846964 - 3846921
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||| || |||||||||||||||||||||||||    
T  3846964 atcatagtttgtattagtatgattttgagtccgaattcacaaca 3846921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 31659563 - 31659606
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||| ||| |||||||||||||||||||||||||||||||||    
T  31659563 atcatattttatattggtgtgattttgagtccgaattcacaaca 31659606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 49918675 - 49918718
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  49918675 atcatagtttgtattggtgtgattttgagtctgaatttacaaca 49918718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 13659191 - 13659153
Alignment:
Q  19 atagtttgtattggtgtgattttgagtccgaattcacaa 57  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  13659191 atagtttgtattgatgtgattttgagtccgaattcacaa 13659153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 37559713 - 37559664
Alignment:
Q  11 cagagatcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||||||    
T  37559713 cagacatcatagtttatattggtgtgagttttgagtccgaattcacaaca 37559664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 3189664 - 3189708
Alignment:
Q  11 cagagatcatagtttgtattggtgtgattttgagtccgaattcac 55  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||    
T  3189664 cagacatcatagtttatattggtgtgattttgtgtccgaattcac 3189708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 3198481 - 3198525
Alignment:
Q  11 cagagatcatagtttgtattggtgtgattttgagtccgaattcac 55  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||    
T  3198481 cagacatcatagtttatattggtgtgattttgtgtccgaattcac 3198525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 3207320 - 3207364
Alignment:
Q  11 cagagatcatagtttgtattggtgtgattttgagtccgaattcac 55  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||    
T  3207320 cagacatcatagtttatattggtgtgattttgtgtccgaattcac 3207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 20762993 - 20763037
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtcc-gaattcacaaca 59  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  20762993 atcatagtttgtattggtgtgattttgagaccggaattcacaaca 20763037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 28223265 - 28223221
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||    
T  28223265 atcatagtttgtattggtctgagttttgagtccgaattcacaaca 28223221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 196753 - 196710
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||    
T  196753 atcataatttgtattggtgtgaatttgagtacgaattcacaaca 196710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 23555114 - 23555071
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||    
T  23555114 atcattgtttctattggtgcgattttgagtccgaattcacaaca 23555071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 50167023 - 50166980
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||    
T  50167023 atcatagtttgttttggtgtgattttgagttcgagttcacaaca 50166980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 927817 - 927785
Alignment:
Q  27 tattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||| |||||||||||||||||||||||||||    
T  927817 tattgatgtgattttgagtccgaattcacaaca 927785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 4552492 - 4552448
Alignment:
Q  16 atcatagtttgtattggtgtg-attttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||    
T  4552492 atcatagtttgtattggtgtgaaatttgagtccgaattcgcaaca 4552448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 13137824 - 13137780
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||    
T  13137824 atcataatttgtattggtgtgagttttgagtccgaatttacaaca 13137780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 19752988 - 19753032
Alignment:
Q  16 atcatagtttgtattggtgtg-attttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||| | |||||||| ||||||||||||    
T  19752988 atcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 19753032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 30476287 - 30476247
Alignment:
Q  19 atagtttgtattggtgtga-ttttgagtccgaattcacaac 58  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  30476287 atagtttgtattggtgtgagttttgagttcgaattcacaac 30476247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 152 - 490
Target Start/End: Complemental strand, 5062 - 4725
Alignment:
Q  152 aatgcatataagattcaaggaagagcttaaagagttacttggtgaaaggtactatgataaaggaggattaccaaaagtatttattgtaaagaaattcatt 251  Q
    ||||||| |||||||||||||||| ||| |||||||||||||||||   ||||||| ||||||||||||||||||||| ||||||| |||||||| ||||    
T  5062 aatgcatttaagattcaaggaagaacttgaagagttacttggtgaagcatactatggtaaaggaggattaccaaaagtgtttattgaaaagaaatacatt 4963  T
Q  252 gttttagttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtg 351  Q
    | |  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||     |||||||||||||||||||    
T  4962 ggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgctgtgaaaggattg-----attgaaggaggtgatggtg 4868  T
Q  352 gatgtgaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattg 451  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  4867 gatgtgaggcttgtggtgatataaagtttgttccttgtaaaacatgttatggaagttgtaaaacatactatgaagatgattatgaagaagatgataattg 4768  T
Q  452 tgaggtt----ggtgagtgtggattccaaaggtgtcctcattg 490  Q
    |||||||    ||||||||||||||||||| |||| |||||||    
T  4767 tgaggttggtgggtgagtgtggattccaaatgtgttctcattg 4725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 6599290 - 6599333
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6599290 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 6599333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 6674743 - 6674786
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6674743 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 6674786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 41366461 - 41366420
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaa 57  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41366461 atcatagtttgtattggtgtgattttgagtccgaattcacaa 41366420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 5689592 - 5689635
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  5689592 atcatagtttgtattggtgtgattttgagtcggaattcacaaca 5689635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 12702474 - 12702431
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  12702474 atcatagtttgtattgatgtgattttgagtccgaattcacaaca 12702431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 30143665 - 30143708
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  30143665 atcatagtttgtattggtgtgattttgagtctgaattcacaaca 30143708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 15213111 - 15213155
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcacaaca 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  15213111 atcatagtttgtattggtgtgagttttgagtccgaattcacaaca 15213155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 4731983 - 4732026
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||| |||||||||||||||||||||||| |||||||||||||    
T  4731983 atcattgtttgtattggtgtgattttgagttcgaattcacaaca 4732026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 8965534 - 8965492
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  8965534 atcatagttt-tattggtgtgattttgagttcgaattcacaaca 8965492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 18105919 - 18105876
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||||    
T  18105919 atcatagtttgtattagtgtgattttgagtctgaattcataaca 18105876  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 33352475 - 33352518
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||| ||| ||||||||||||||||||| |||||||||||||    
T  33352475 atcataatttatattggtgtgattttgagtacgaattcacaaca 33352518  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 40321400 - 40321442
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  40321400 atcatagtttgtattg-tgtgattttgagtcggaattcacaaca 40321442  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 1345213 - 1345175
Alignment:
Q  22 gtttgtattggtgtgattttgagtccgaattcacaacac 60  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  1345213 gtttgtatttgtgtgattttgaatccgaattcacaacac 1345175  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 4743068 - 4743026
Alignment:
Q  19 atagtttgtattggtgtgat-tttgagtccgaattcacaacac 60  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  4743068 atagtttgtattggtgtgagatttgagtccgaattcacaacac 4743026  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 4734038 - 4734075
Alignment:
Q  22 gtttgtattggtgtgattttgagtccgaattcacaaca 59  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  4734038 gtttgtattggtgtaattttgaatccgaattcacaaca 4734075  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 1746062 - 1746018
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccg-aattcacaaca 59  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||    
T  1746062 atcatagttcgtattggtgtgattttgagaccgaaattcacaaca 1746018  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 3303514 - 3303474
Alignment:
Q  16 atcatagtttgtattggtgtga-ttttgagtccgaattcac 55  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  3303514 atcatagtttgtattggtgtgagatttgagtccgaattcac 3303474  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 8154105 - 8154148
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtccgaattcacaacac 60  Q
    |||||||||| |||| ||||||||||||| |||||||||||||||    
T  8154105 atcatagttt-tattagtgtgattttgagcccgaattcacaacac 8154148  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 11711837 - 11711805
Alignment:
Q  27 tattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||||| |||||||||||||||||||||||    
T  11711837 tattggtgtaattttgagtccgaattcacaaca 11711805  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 19945202 - 19945158
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagtcc-gaattcacaaca 59  Q
    |||| |||||||||||||||||||||||| || ||||||||||||    
T  19945202 atcaaagtttgtattggtgtgattttgagaccggaattcacaaca 19945158  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 32902021 - 32901989
Alignment:
Q  27 tattggtgtgattttgagtccgaattcacaaca 59  Q
    ||||||| |||||||||||||||||||||||||    
T  32902021 tattggtctgattttgagtccgaattcacaaca 32901989  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 148952 - 148914
Alignment:
Q  19 atagtttgtattggtgtgattttgagtccgaattcacaa 57  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  148952 atagtttgtattgatgtgattttgagtccgaattcacaa 148914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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