View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20242_low_17 (Length: 502)
Name: NF20242_low_17
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 2469665 - 2470156
Alignment:
| Q |
1 |
tgaaaagtgaacatggagcaatataatgaacactattggctacatgtttgaaaatgacttacaatattgtttttcaacgccttttgaccaaccatataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2469665 |
tgaaaagtgaacatggagcaatataatgaacactattggctacatgtttgaaaatgacttacaatattgtttttcaacgccttttgaccaaccatataac |
2469764 |
T |
|
| Q |
101 |
agttttatcataatacaacatcaaattattttgggaacacagttttaatcatctgcaaaaagaatgaattgatttctttgcgatgcaaagatgtctttag |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
2469765 |
agttttatcataatacaacatcaaattcttttgggaacacaattttaatcatctgcaaaaagaatgaattgatttctttgtgatgcaaagatgtctttcg |
2469864 |
T |
|
| Q |
201 |
tttatccaaattctatgttttctagaaatattatcactttatttctactccttcctttggatttatattttattgtatttgaaacaatgtaacttgaaag |
300 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2469865 |
tttaaccagattctatgttttctagaaatattatcactttatttctactccttcctttggatttatattttattgtatttgaaacaatgtaacttgaaag |
2469964 |
T |
|
| Q |
301 |
cctaatctgaccatctgatctgactaatcttcttaggagaaagtatcacaagttataaagaatgacttctttcgaactcatctaataggttactttgcac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2469965 |
cctaatctgaccatctgatctgactaatcttcttaggagaaagtatcacaagttataaagaatgacttctttcgaactcatctaataggttactttgcac |
2470064 |
T |
|
| Q |
401 |
aggtttggagaaactgatctacctattgatgatattgctgctgtttgcctattggtaaattcacctccatgtttatctaaacaccgtagtat |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2470065 |
aggtttggagaaactgatctacctattgatgatattgctgctgtttgcctattggtaaattcacctccatgtttatctaaacgccgtagtat |
2470156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University