View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_19 (Length: 442)
Name: NF20242_low_19
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_19 |
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| [»] scaffold0227 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 10863140 - 10863375
Alignment:
| Q |
1 |
ccaatgtttccggtatttacattgaaagctgtacttataagtgttgtacaaatatgcctcatagctctttgcagatatcattcatccatcacagttgata |
100 |
Q |
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| T |
10863140 |
ccaatgtttccagtatttacattgaaagttgtacttataagtgttgtacaaatatacctcatagctctatgcagatatcattcatccatcacagttgata |
10863239 |
T |
|
| Q |
101 |
agcttaaagtatctaagtttaatgttcgtgaatatggatgacagaggagaagttttgtatattgttagtgtacttaaaagtgcttctaacttggtggaag |
200 |
Q |
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| T |
10863240 |
agcttaaagtatctggaattatttaccttgaatatgaatgacagaggagaagttttgtatattgttagtgtactcaaaagtgcttctaacctggtggaac |
10863339 |
T |
|
| Q |
201 |
ttaatatactggtgacattaaataccttattctttc |
236 |
Q |
| |
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||| ||||| |||||| |||||||||||||||||| |
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| T |
10863340 |
ttactatacaggtgaccataaataccttattctttc |
10863375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 10902452 - 10902660
Alignment:
| Q |
30 |
tgtacttataagtgttgtacaaatatgcctcatagctctttgcagatatcattcatccatcacagttgataagcttaaagtatctaagtttaatgttcgt |
129 |
Q |
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|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||| | |||| | | |
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| T |
10902452 |
tgtacttataagtgctgtacaaatatgcctcataggtctatgcagatatcattcatccatcatagttgataagcgtaaagtatctgaaattaaaagcctt |
10902551 |
T |
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| Q |
130 |
gaatatggatgacagaggagaagttttgtatattgttagtgtacttaaaagtgcttctaacttggtggaagttaatatactggtgacattaaatacctta |
229 |
Q |
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| T |
10902552 |
gaatatggatgacagaggagaagttttggatattgttagtgtactcaaaagtgcttctaacctggtggaacttgatatacaggtgacaataaatacctta |
10902651 |
T |
|
| Q |
230 |
ttctttctt |
238 |
Q |
| |
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||||||||| |
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| T |
10902652 |
ttctttctt |
10902660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 321 - 424
Target Start/End: Original strand, 10863459 - 10863562
Alignment:
| Q |
321 |
agagtaataactatgcgagtgttaaagagccgaaccaatcagaggagttagaatgcaatagttgttgtcttagtcaacttcagactgtgaatatcagagt |
420 |
Q |
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||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
10863459 |
agagtaataactatgatggtgttgaagagccgaaccaatcggaggagttagaatgcaatagttgttgtcttagtcaacttcagacggtgcgtatcagagt |
10863558 |
T |
|
| Q |
421 |
tgga |
424 |
Q |
| |
|
|||| |
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| T |
10863559 |
tgga |
10863562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 195
Target Start/End: Complemental strand, 40010389 - 40010264
Alignment:
| Q |
70 |
tgcagatatcattcatccatcacagttgataagcttaaagtatctaagtttaatgttcgtgaatatggatgacagaggagaagttttgtatattgttagt |
169 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| | |||| |||||||| ||||| |||| |||| ||||| ||||||||||| |
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| T |
40010389 |
tgcagatatcattcatccatcacagctgataagcttaaagtatctgaaattaaatatcgtgaatttggatcgaagagaagaacttttgcatattgttagt |
40010290 |
T |
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| Q |
170 |
gtacttaaaagtgcttctaacttggt |
195 |
Q |
| |
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||||| ||||||||||||||| |||| |
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| T |
40010289 |
gtactcaaaagtgcttctaacctggt |
40010264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 10904557 - 10904609
Alignment:
| Q |
372 |
aatgcaatagttgttgtcttagtcaacttcagactgtgaatatcagagttgga |
424 |
Q |
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| T |
10904557 |
aatgcaatagttgttgtcttagttaacttcagactgtgcatatcagagttgga |
10904609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 321 - 379
Target Start/End: Original strand, 10902895 - 10902953
Alignment:
| Q |
321 |
agagtaataactatgcgagtgttaaagagccgaaccaatcagaggagttagaatgcaat |
379 |
Q |
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|||||| ||||||||| ||||| |||||||||||||||| |||||||||||||||||| |
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| T |
10902895 |
agagtattaactatgcttgtgttgaagagccgaaccaatcggaggagttagaatgcaat |
10902953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 16866244 - 16866373
Alignment:
| Q |
70 |
tgcagatatcattcatccatcacagttgataagcttaaagtatctaagtttaatgttcgtgaatatggatgacagaggagaagttttgtatattgttagt |
169 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||| |||||||| | ||| ||||||| ||||||| |||| |||| ||||||||||||||||| |
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| T |
16866244 |
tgcagatatcattcatccatcacagctgataggcttgaagtatctgaaattagatcgcgtgaatttggatgaaagagaagaacttttgtatattgttagt |
16866343 |
T |
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| Q |
170 |
gtacttaaaagtgcttctaacttggtggaa |
199 |
Q |
| |
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||||| ||||||||||||||| |||||||| |
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| T |
16866344 |
gtactcaaaagtgcttctaacctggtggaa |
16866373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 2555 - 2435
Alignment:
| Q |
70 |
tgcagatatcattcatccatcacagttgataagcttaaagtatct-aagtttaatgttcgtgaatatggatgacagaggagaagttttgtatattgttag |
168 |
Q |
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|||||||||||||| ||| ||||||||||| |||||||||||||| || || ||| | |||||| ||||||| ||||||||| | | ||||||||||| |
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| T |
2555 |
tgcagatatcattcctccgtcacagttgattagcttaaagtatctgaaattgaat-tcggtgaatttggatgaaagaggagaactatattatattgttag |
2457 |
T |
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| Q |
169 |
tgtacttaaaagtgcttctaac |
190 |
Q |
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|||||| ||||||||||||||| |
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| T |
2456 |
tgtactcaaaagtgcttctaac |
2435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 417
Target Start/End: Complemental strand, 2319 - 2247
Alignment:
| Q |
345 |
aagagccgaaccaatcagaggagttagaatgcaatagttgttgtcttagtcaacttcagactgtgaatatcag |
417 |
Q |
| |
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||||||| ||||| |||||||||||||||||| |||||||| |||||| ||| |||||||||| |||||| |
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| T |
2319 |
aagagccagaccaaccagaggagttagaatgcacaagttgttgccttagtagactacagactgtgattatcag |
2247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 35748017 - 35747961
Alignment:
| Q |
359 |
tcagaggagttagaatgcaatagttgttgtcttagtcaacttcagactgtgaatatc |
415 |
Q |
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||||||||||||||||||||||||| ||| |||| | | || |||| |||||||||| |
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| T |
35748017 |
tcagaggagttagaatgcaatagttattgccttaataatctgcagattgtgaatatc |
35747961 |
T |
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