View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_2 (Length: 818)
Name: NF20242_low_2
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 97 - 768
Target Start/End: Complemental strand, 51190385 - 51189702
Alignment:
| Q |
97 |
catgaacttgttcttcttgatcatgaagaaggtggaagcagcaatgttacaaagtggaagcaagaacaacctttgcatatgattaatcataaaatattga |
196 |
Q |
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| T |
51190385 |
catgaacttgttcttcttgatcatgaagaaggtggaagcagcaatgttacaaagtggaagcaagaacaaactttgcatatgattaatcataaaatattga |
51190286 |
T |
|
| Q |
197 |
tctctgatgttgttacaaggagtaggtggagtgatcttaattcttcagatttgttatcattgaatagtgaaatgcttcatgatatgtcaagcactagatt |
296 |
Q |
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| T |
51190285 |
tctctgatgttgttacaaggagtaggtggagtgatcttaattcttcagatttgttatcattgaatagtgaaatgcttcatgatatgtcaagcactagatt |
51190186 |
T |
|
| Q |
297 |
ctctcctgaatttcatggaatttcaagtgttcattctgatgaagaagaaaattcgtttacggcattgaatcctggtgagaagaggagtatgtctgagata |
396 |
Q |
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| T |
51190185 |
ctctcctgaatttcatggaatttcaagtgttcattctgatgaagaagaaaattcgtttacggcattgaatcctggtgagaagaggagtatgtctgagata |
51190086 |
T |
|
| Q |
397 |
gcaaatgttccaaggtttgtcgaaatcagtagaagtggggagaatggaagtgatgagaggttgtggaggatttggatgccaattgcaaggagaacagttc |
496 |
Q |
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| T |
51190085 |
gcaaatgttccaaggtttgtcgaaatcagtagaagtggggagaatggaagtgatgagaggttgtggaggatttggatgccaattgcaaggagaacagttc |
51189986 |
T |
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| Q |
497 |
aatggtttgcaagacaagaaacaaactctgttcaattacaac---aacataaacatttagtttcaaacg------------------tttgattcattgt |
575 |
Q |
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| T |
51189985 |
aatggtttgcaagacaagaaacaaactctgttcaattacaacaacaacataaacatttagtttcaaacgtttgatcattgtgtacattttgattcattgt |
51189886 |
T |
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| Q |
576 |
cggtttaatcagataaaatatacttaccagaggattacaatcttataatatagcatgcaaatgcaaatgtgtggtttatgaatatgtagaagtaaaggta |
675 |
Q |
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| T |
51189885 |
cggtttaatcagataaaatatacttaccagaggattacaatcttataatatagc------atgcaaatgtgtggtttatgaatatgtagaagtaaaggta |
51189792 |
T |
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| Q |
676 |
tactactgtatcattccttttgttcttctaagttgattaggaacactttctgtggaatcatcatctcattatgataataatgtcactgtttgc |
768 |
Q |
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| T |
51189791 |
---taatgtatcattcattttgttcttctaagttgattaggaacactttatgtggaatcatcatctcattatgataataatgtcactgtttgc |
51189702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 51190487 - 51190421
Alignment:
| Q |
1 |
ttaagagtcccttcaaatttaagtgaagatccaaatcttgaaatctttattcagagacaaccatcac |
67 |
Q |
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| T |
51190487 |
ttaagagtcccttcaaatttaagtgaagatccaaatcttgaaatctttattcagagacaaccatcac |
51190421 |
T |
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