View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20242_low_20 (Length: 430)
Name: NF20242_low_20
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_20 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 25655507 - 25655259
Alignment:
| Q |
182 |
atttgaccataattctcggtagtattaaaaatcgcgatgcagatgcaatttaacatcgtgattgtaaaccataactatttgcaatatactcaaagggtat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
25655507 |
atttgaccataattctcggtagtattaaaaatcgcgatgcagatgcaatttaacatcgtgattgtaaaccataactatttgcaatatactcaaagggaat |
25655408 |
T |
|
| Q |
282 |
tagtatgcatactcaaagcttgagcttttcgcctacgatcatctgtaagaataacagttgaaggaactctcttagcaggaccacacgaatatcccgctcc |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
25655407 |
tagtatgcatactcaaagcttgagcttttcgcctacgatcatctgtaagaataacagttgaaggaactctcttagcagggccacatgaatatcccgctcc |
25655308 |
T |
|
| Q |
382 |
cggtccaagtaacttaaaatcctgaggtagtttaactgtcttgttagtt |
430 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25655307 |
cggtccaagcaatttaaaatcctgaggcagtttaactgtcttgttagtt |
25655259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 25655646 - 25655506
Alignment:
| Q |
19 |
gagaaacattagataatactaataatacattccacgacagtttctttaaagggttgttcgtaaccatcaaggttttagaaaatgatctgcaattacaatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25655646 |
gagaaacattagataatactaataatacattccacgacagtttctttaaagggttgttcgtaaccatcaaggttttagaaaatgatctgcaattacaatc |
25655547 |
T |
|
| Q |
119 |
aaggtaacgacatcacgttttgatgtcaaaatgactgcaat |
159 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
25655546 |
aaggtaacgacatcatgttttgatgtcacaatgactgcaat |
25655506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University