View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20242_low_21 (Length: 422)

Name: NF20242_low_21
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20242_low_21
NF20242_low_21
[»] chr2 (19 HSPs)
chr2 (109-406)||(4240583-4240880)
chr2 (112-321)||(29109131-29109348)
chr2 (141-259)||(3919852-3919970)
chr2 (146-322)||(27866621-27866795)
chr2 (112-321)||(37630343-37630547)
chr2 (1-67)||(4240924-4240987)
chr2 (112-259)||(5526288-5526433)
chr2 (171-325)||(4638160-4638313)
chr2 (264-321)||(30906971-30907028)
chr2 (1-64)||(30906727-30906791)
chr2 (168-231)||(44018966-44019029)
chr2 (1-62)||(29109049-29109111)
chr2 (109-217)||(30906824-30906930)
chr2 (172-231)||(3690120-3690179)
chr2 (264-322)||(31111412-31111470)
chr2 (170-264)||(38607033-38607126)
chr2 (166-231)||(33037051-33037116)
chr2 (9-64)||(5526451-5526507)
chr2 (21-64)||(10722030-10722074)
[»] chr8 (12 HSPs)
chr8 (109-322)||(9505014-9505236)
chr8 (112-321)||(3767625-3767832)
chr8 (112-323)||(16570831-16571049)
chr8 (171-317)||(34760833-34760979)
chr8 (171-321)||(44223354-44223503)
chr8 (226-317)||(20860410-20860500)
chr8 (113-259)||(32321870-32322015)
chr8 (173-321)||(7956369-7956516)
chr8 (172-321)||(17722448-17722596)
chr8 (128-208)||(3555402-3555482)
chr8 (9-67)||(9505262-9505321)
chr8 (126-259)||(25456114-25456247)
[»] chr3 (23 HSPs)
chr3 (112-318)||(44471020-44471234)
chr3 (109-322)||(26757592-26757813)
chr3 (141-321)||(44681994-44682161)
chr3 (145-321)||(30554540-30554725)
chr3 (126-233)||(54246529-54246636)
chr3 (126-321)||(11503308-11503512)
chr3 (141-321)||(13870208-13870388)
chr3 (265-321)||(33231582-33231638)
chr3 (142-257)||(779495-779611)
chr3 (166-266)||(44285624-44285724)
chr3 (141-319)||(12937725-12937912)
chr3 (112-197)||(23659517-23659601)
chr3 (9-64)||(26757830-26757886)
chr3 (271-322)||(23659400-23659451)
chr3 (264-315)||(46892610-46892661)
chr3 (1-62)||(23659623-23659685)
chr3 (141-254)||(28550519-28550632)
chr3 (112-168)||(46892748-46892803)
chr3 (112-231)||(26918411-26918529)
chr3 (114-197)||(33231481-33231563)
chr3 (9-47)||(46892839-46892877)
chr3 (146-182)||(22240655-22240691)
chr3 (21-64)||(44681905-44681949)
[»] chr4 (10 HSPs)
chr4 (161-323)||(42141255-42141417)
chr4 (112-317)||(53393124-53393337)
chr4 (272-322)||(39839104-39839154)
chr4 (264-321)||(23108040-23108097)
chr4 (201-316)||(13207433-13207547)
chr4 (1-47)||(8606021-8606067)
chr4 (269-322)||(33884359-33884412)
chr4 (264-321)||(55106605-55106662)
chr4 (146-266)||(4413518-4413638)
chr4 (112-164)||(19682038-19682089)
[»] chr6 (14 HSPs)
chr6 (168-321)||(23585863-23586015)
chr6 (113-322)||(2454079-2454296)
chr6 (169-321)||(23301411-23301572)
chr6 (112-259)||(11846311-11846457)
chr6 (169-327)||(23300419-23300586)
chr6 (201-318)||(7176536-7176662)
chr6 (112-316)||(9826742-9826954)
chr6 (1-64)||(11846475-11846539)
chr6 (1-64)||(11971645-11971709)
chr6 (264-320)||(26186810-26186866)
chr6 (141-187)||(5076272-5076318)
chr6 (264-306)||(7238296-7238338)
chr6 (9-64)||(9826972-9827028)
chr6 (201-241)||(32613903-32613943)
[»] chr5 (6 HSPs)
chr5 (112-303)||(1498163-1498362)
chr5 (113-241)||(7239249-7239376)
chr5 (113-241)||(7244425-7244552)
chr5 (141-232)||(17770310-17770401)
chr5 (282-321)||(39785966-39786005)
chr5 (263-321)||(16746668-16746726)
[»] chr7 (21 HSPs)
chr7 (141-322)||(48070613-48070803)
chr7 (156-266)||(44523684-44523793)
chr7 (111-318)||(25545175-25545390)
chr7 (109-315)||(12470975-12471189)
chr7 (114-209)||(45595452-45595546)
chr7 (112-322)||(31136157-31136357)
chr7 (264-322)||(3997071-3997129)
chr7 (112-250)||(12471703-12471840)
chr7 (109-187)||(2197636-2197713)
chr7 (1-62)||(31136376-31136438)
chr7 (173-258)||(7995017-7995102)
chr7 (112-238)||(12470192-12470317)
chr7 (264-322)||(27227032-27227090)
chr7 (171-321)||(46993258-46993407)
chr7 (280-325)||(11727440-11727485)
chr7 (169-257)||(2923026-2923114)
chr7 (146-226)||(11727330-11727410)
chr7 (264-316)||(12471862-12471914)
chr7 (9-64)||(25545102-25545158)
chr7 (1-41)||(45595597-45595637)
chr7 (7-47)||(48638219-48638259)
[»] chr1 (13 HSPs)
chr1 (112-322)||(11911583-11911802)
chr1 (171-319)||(25785763-25785910)
chr1 (109-238)||(17530696-17530824)
chr1 (171-319)||(18461120-18461268)
chr1 (155-255)||(513028-513128)
chr1 (145-323)||(8414579-8414766)
chr1 (220-318)||(27320540-27320647)
chr1 (269-322)||(4919490-4919543)
chr1 (264-321)||(16584993-16585050)
chr1 (268-317)||(32678553-32678602)
chr1 (112-206)||(32678425-32678518)
chr1 (263-317)||(15905132-15905186)
chr1 (280-321)||(11619934-11619975)
[»] scaffold0002 (1 HSPs)
scaffold0002 (176-321)||(344373-344517)
[»] scaffold0070 (1 HSPs)
scaffold0070 (126-322)||(13755-13950)
[»] scaffold0590 (1 HSPs)
scaffold0590 (112-258)||(8239-8384)
[»] scaffold0565 (1 HSPs)
scaffold0565 (173-314)||(1873-2013)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 109 - 406
Target Start/End: Complemental strand, 4240880 - 4240583
Alignment:
Q  109 gaaggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaacta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  4240880 gaaggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaaactaaacta 4240781  T
Q  209 tatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggttcggtttgaattttcggtttcatcggttttgtccaaacc 308  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  4240780 tatcgattttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggttcggcttggattttcggtttcatcagttttgtccaaacc 4240681  T
Q  309 acttacacccctaactaatcgtatgctaactcgtaaacttggccaagtgaaagttggttatttttctaataagtgctagacttctgtggttacagaca 406  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  4240680 acttacatccctaactaatcgtatgctaactcgtaaacttggccaagtgaaggttggttatttttctaataagtgctagacttatgtggttacagaca 4240583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 112 - 321
Target Start/End: Original strand, 29109131 - 29109348
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    ||||||||||||||||| || | || || |||||||||| ||||||| ||||| ||||||||||||||||||||||  | |||||||| |||||||| ||    
T  29109131 ggataatattactaaaa-tgggaaggaaggttagcatcgatttggttcatcggttctttggatctcaaaattaaaaaccgagaaccaaaccaaactagat 29109229  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtata---------tttggttcggtttgaattttcggtttcatcggttttgtc 302  Q
     ||||| ||||| ||||||||| |||||||  |||||||||||||||| |||         |||||||||||||| |||||| |||||||| ||||||||    
T  29109230 tggtttaggttgcttcggttcggttttgaactgaaccaaacaaggtcggataatttttcagtttggttcggtttggattttcagtttcatcagttttgtc 29109329  T
Q  303 caaaccacttacaccccta 321  Q
    | |||||||||||||||||    
T  29109330 cgaaccacttacaccccta 29109348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 3919852 - 3919970
Alignment:
Q  141 gttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttga 240  Q
    ||||||||||||| |||| ||||| ||||| |||||||||||||||| | ||||||||| |||||||| |||||||| | ||||||||||||| ||||||    
T  3919852 gttagcatcggttcggttcatcggttctttagatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggttcggttttga 3919951  T
Q  241 atggaaccaaacaaggtcg 259  Q
    |   |||||||||| ||||    
T  3919952 accaaaccaaacaaagtcg 3919970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 146 - 322
Target Start/End: Complemental strand, 27866795 - 27866621
Alignment:
Q  146 catcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatgga 245  Q
    ||||||||  ||| ||||| |||| |||||||||||||||||  | |||| | | |||||||  |||  |||  |||||||| ||||| |||||||  ||    
T  27866795 catcggttcagttcatcggttcttgggatctcaaaattaaaaaccgagaatcgaaccaaactcgatcaatttaagttggttcagttcggttttgaaccga 27866696  T
Q  246 accaaacaaggtcgtatatttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaa 322  Q
    ||||| |||||||| ||| ||  ||||||||| ||||||||||| |||| |||||||| ||||||||||||||||||    
T  27866695 accaagcaaggtcggatactt--ttcggtttggattttcggttttatcgattttgtccgaaccacttacacccctaa 27866621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 321
Target Start/End: Complemental strand, 37630547 - 37630343
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    ||||||||||||||||  || ||||| |||||||||||  || |||| | ||| || |||||||||||||||||||  | |||||  | |||||||| ||    
T  37630547 ggataatattactaaag-tggggagtgatgttagcatccattcggttcaccggttcattggatctcaaaattaaaaaccgagaactgaaccaaactagat 37630449  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggttcggtttgaattttcggtttcatcggttttgtccaaaccact 311  Q
    | |||| |||||||| || |||||||||||   |||||| ||||||   ||| ||  |||||||||    |||||||||||||||||||||| || ||||    
T  37630448 cagtttaggttggtttggatcgattttgaaccaaaccaagcaaggttcgatactt-tttcggtttg---gttcggtttcatcggttttgtccgaatcact 37630353  T
Q  312 tacaccccta 321  Q
    ||||||||||    
T  37630352 tacaccccta 37630343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4240987 - 4240924
Alignment:
Q  1 atgatagaagaaagtggataaattaaggagtattttatgttgaacttaattatgagcttaatcacaa 67  Q
    ||||||| |||||||||||   || ||||||||||||||||||||||||||||||||||||||||||    
T  4240987 atgataggagaaagtggat---ttgaggagtattttatgttgaacttaattatgagcttaatcacaa 4240924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 5526433 - 5526288
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    |||||||| |||||||| || ||||| |  |||||||||||| |||| ||| | ||||||||||||||||||||||    |||||| | |||||||| ||    
T  5526433 ggataataatactaaaa-tggggagtgagattagcatcggttcggttcatctgttctttggatctcaaaattaaaaactgagaaccgaaccaaactagat 5526335  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaaacaaggtcg 259  Q
    |||||| ||||||||| ||||  |||||||  |||| |||||||||||    
T  5526334 cggtttaggttggttc-gttcagttttgaaccgaacaaaacaaggtcg 5526288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 325
Target Start/End: Complemental strand, 4638313 - 4638160
Alignment:
Q  171 ggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggtt 270  Q
    |||||||||||| ||||  || ||||||| |||||||| ||| || ||| ||||||||| |||||||  ||  ||||| |||||||||| ||||||  ||    
T  4638313 ggatctcaaaatgaaaaaccatgaaccaaaccaaactaaatcagtattgattggttcggatcgatttcaaaccgaaccgaacaaggtcggatattt-ttt 4638215  T
Q  271 cggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaacta 325  Q
    ||||||| | |||||||||| | ||||| |||  |||| |||||||| |||||||    
T  4638214 cggtttggactttcggtttcgttggtttagtctgaaccgcttacacctctaacta 4638160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 30906971 - 30907028
Alignment:
Q  264 tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    |||||||| || || |||||||||||||||| ||||||||||||||||||||||||||    
T  30906971 tttggttcagtctggattttcggtttcatcgattttgtccaaaccacttacaccccta 30907028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 30906727 - 30906791
Alignment:
Q  1 atgatagaagaaagtggataaattaaggagtattttatgttgaac-ttaattatgagcttaatca 64  Q
    ||||| || ||||||| || ||||||||||||||||||||||||| |||||| ||||||||||||    
T  30906727 atgatggacgaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatca 30906791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 44018966 - 44019029
Alignment:
Q  168 tttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggtt 231  Q
    ||||||||||||||||||||| | |||||| | |||||||| ||||||||  ||||||||||||    
T  44018966 tttggatctcaaaattaaaatccgagaaccgaaccaaactaaatcggtttaagttggttcggtt 44019029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29109049 - 29109111
Alignment:
Q  1 atgatagaagaaagtggataaattaaggagtattttatgttgaac-ttaattatgagcttaat 62  Q
    ||||||| |||||||| || |||||||||||||||||||||| || |||||| ||||||||||    
T  29109049 atgataggagaaagtgaatgaattaaggagtattttatgttggactttaattttgagcttaat 29109111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 30906824 - 30906930
Alignment:
Q  109 gaaggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaacta 208  Q
    |||||||||||||||||||| || | ||| | |||| ||||| ||  |||||| || |||||||||||||||||| |||| | |||||| |  |||||||    
T  30906824 gaaggataatattactaaaa-tgggaagtgaggttaccatcgattcagtttattggttctttggatctcaaaatt-aaatccgagaaccgaatcaaacta 30906921  T
Q  209 tatcggttt 217  Q
    |||||||||    
T  30906922 tatcggttt 30906930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 3690120 - 3690179
Alignment:
Q  172 gatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggtt 231  Q
    |||||||||||||||| || |||||| | |||||||| |||||||| |||||||| ||||    
T  3690120 gatctcaaaattaaaaatcgagaaccgaaccaaactagatcggtttaggttggtttggtt 3690179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 31111470 - 31111412
Alignment:
Q  264 tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaa 322  Q
    ||||||||  |||| |||||||||||| | | ||||||| |||||||||||||||||||    
T  31111470 tttggttcaatttggattttcggtttcgttgattttgtctaaaccacttacacccctaa 31111412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 264
Target Start/End: Complemental strand, 38607126 - 38607033
Alignment:
Q  170 tggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatat 264  Q
    ||||||||||||| ||||  |||||||| | |||||| |  || |||| | ||||||||||||| |||||||| ||| |||||||||||| ||||    
T  38607126 tggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttcggttcggttttgaatcgaa-caaacaaggtcggatat 38607033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 33037051 - 33037116
Alignment:
Q  166 tctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggtt 231  Q
    |||||| || ||||| |||||| ||||||||| | |||||||| ||||||||  ||||||||||||    
T  33037051 tctttgaatttcaaatttaaaaatcaagaaccgaaccaaactaaatcggtttaagttggttcggtt 33037116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 5526507 - 5526451
Alignment:
Q  9 agaaagtggataaattaaggagtattttatgttgaac-ttaattatgagcttaatca 64  Q
    |||||||| || |||||||||||||||||||||| || |||||| |||| |||||||    
T  5526507 agaaagtgaatgaattaaggagtattttatgttggactttaattttgagtttaatca 5526451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 10722074 - 10722030
Alignment:
Q  21 aattaaggagtattttatgttgaac-ttaattatgagcttaatca 64  Q
    |||||||||||||||||||||| || |||||| ||||||||||||    
T  10722074 aattaaggagtattttatgttggactttaattttgagcttaatca 10722030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 109 - 322
Target Start/End: Complemental strand, 9505236 - 9505014
Alignment:
Q  109 gaaggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaacta 208  Q
    |||||||||||||||||||| || ||||| | ||| ||||||||| |||||||||| |  |||||| ||||||||||||| | |||||| | ||||||||    
T  9505236 gaaggataatattactaaaa-tggggagtgaggttggcatcggttcggtttatcggtttgttggatttcaaaattaaaatcctagaaccgaaccaaacta 9505138  T
Q  209 tatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtata----------tttggttcggtttgaattttcggtttcatcggttt 298  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| | |||          ||||||| |||||| ||||||||||||||||||||    
T  9505137 tatcggttttggttggttcggttcgattttgaatcgaaccaaacaaggttggatatttttttcgttttggttaggtttggattttcggtttcatcggttt 9505038  T
Q  299 tgtccaaaccacttacacccctaa 322  Q
    | ||||||||||||||||||||||    
T  9505037 tatccaaaccacttacacccctaa 9505014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 112 - 321
Target Start/End: Original strand, 3767625 - 3767832
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    ||||||||||||||||| || ||||| | ||||||||||||| |||| ||||| || |||||||||||||| ||||  | |||||||| |||||||| ||    
T  3767625 ggataatattactaaaa-tggggagtgaggttagcatcggttcggttcatcggttcattggatctcaaaataaaaaaccgagaaccaaaccaaactagat 3767723  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggttcggtttgaattttcggtttcatcggttttgtccaaaccact 311  Q
    |||||| | ||||||||||||| |||||||  |||| ||||||||||| ||| ||  ||||||||| ||||||||||||||||||||||||| |||||||    
T  3767724 cggtttagattggttcggttcggttttgaaccgaactaaacaaggtcggatactt-tttcggtttggattttcggtttcatcggttttgtccgaaccact 3767822  T
Q  312 tacaccccta 321  Q
    ||||| ||||    
T  3767823 tacactccta 3767832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 112 - 323
Target Start/End: Original strand, 16570831 - 16571049
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    |||||||| |||||||| || ||||| | |||||||||||||  ||| ||||| |||||||||||||||||||||| || |||||| | ||||| || ||    
T  16570831 ggataataatactaaaa-tggggagtgaagttagcatcggttcagttcatcggttctttggatctcaaaattaaaaatcgagaacctaaccaaattagat 16570929  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtata--------tttggttcggtttgaattttcggtttcatcggttttgtcc 303  Q
    |||||| |||||||| |||||| |||||||   ||||||||||||| | |||        |||||||||||||||||||| | |||||||||||||||||    
T  16570930 cggtttaggttggtttggttcggttttgaaccaaaccaaacaaggttggatattttttggtttggttcggtttgaatttttgatttcatcggttttgtcc 16571029  T
Q  304 aaaccacttacacccctaac 323  Q
    |||||| |||||||||||||    
T  16571030 aaaccaattacacccctaac 16571049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 171 - 317
Target Start/End: Original strand, 34760833 - 34760979
Alignment:
Q  171 ggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggtt 270  Q
    |||||||||||| ||||  |||||||||| |||||||| |||||||| |||||||||||||||||||||||  |||||||||||| ||  ||| ||  ||    
T  34760833 ggatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaaccaaacaagatcagatactttttt 34760932  T
Q  271 cggtttgaattttcggtttcatcggttttgtccaaaccacttacacc 317  Q
    ||||||| ||||||||||||||||||||||| | |||| ||||||||    
T  34760933 cggtttggattttcggtttcatcggttttgttcgaaccgcttacacc 34760979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 321
Target Start/End: Original strand, 44223354 - 44223503
Alignment:
Q  171 ggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggtt 270  Q
    ||||||| |||| |||| ||| ||||||| |||||||| || ||||| | ||||||| | ||| |||| ||  |||||||||||| || |||||||  ||    
T  44223354 ggatctcgaaatgaaaaatcatgaaccaaaccaaactagattggtttcgattggttcagatcggttttaaactgaaccaaacaagatcatatatttt-tt 44223452  T
Q  271 cggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    ||||||| | |||||||||| | |||||||||| |||||||||||||||||    
T  44223453 cggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 44223503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 20860410 - 20860500
Alignment:
Q  226 tcggttcgattttgaatggaaccaaacaaggtcgtatatttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacc 317  Q
    |||||| |||||||||| |||||||||||||||  ||| ||  ||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  20860410 tcggtttgattttgaatcgaaccaaacaaggtcagataattt-ttcagtttgaattttcggtttcatcggttttgttcgaaccacttacacc 20860500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 32322015 - 32321870
Alignment:
Q  113 gataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatc 212  Q
    ||||||||||||||||  ||| ||| | |||||||| ||||||||||||||| || ||| |||| ||||||||||  | |||||| | ||||| || |||    
T  32322015 gataatattactaaaatggag-agtgaggttagcattggtttggtttatcggttcattgaatcttaaaattaaaaaccgagaaccgaaccaaattagatc 32321917  T
Q  213 ggttttggttggttcggttcgattttgaatggaaccaaacaaggtcg 259  Q
    |||||  |||| ||||||| | |||| ||  ||||||||||||||||    
T  32321916 ggtttatgttgattcggtttgtttttaaaccgaaccaaacaaggtcg 32321870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 321
Target Start/End: Original strand, 7956369 - 7956516
Alignment:
Q  173 atctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggttcg 272  Q
    |||||||||| ||||  || ||||||| |||||||| |||||||| | ||||||||  ||| |||  ||   ||| || |||||||| ||||||  ||||    
T  7956369 atctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcgaatcggtttcaaaccaaacaaagcaaggtcgaatatttt-ttcg 7956467  T
Q  273 gtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    ||||| | |||||||||| | |||||||||| |||||||||||||||||    
T  7956468 gtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 7956516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 321
Target Start/End: Original strand, 17722448 - 17722596
Alignment:
Q  172 gatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggttc 271  Q
    |||||| |||| |||| ||| ||||||| |||||||| |||||||| | || |||||| | | |||  ||  |||||||||||||| | ||||||  | |    
T  17722448 gatctcgaaatgaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatatttt-tcc 17722546  T
Q  272 ggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    |||||| | |||||||||||| |||||| ||| ||||| |||||||||||    
T  17722547 ggtttggactttcggtttcattggttttatccgaaccatttacaccccta 17722596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 3555402 - 3555482
Alignment:
Q  128 aatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaacta 208  Q
    |||||||||||| |||||||||   ||| || ||||| |||||| || |||||||||||| | ||||||||| ||||||||    
T  3555402 aatgaggagtaaggttagcatcaacttgtttcatcggttctttgaatttcaaaattaaaaattaagaaccaaaccaaacta 3555482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 9505321 - 9505262
Alignment:
Q  9 agaaagtggataaattaaggagtattttatgttgaac-ttaattatgagcttaatcacaa 67  Q
    |||||||| || |||||||||||||  |||||||||| |||||| |||||||||||||||    
T  9505321 agaaagtgaatgaattaaggagtatcatatgttgaactttaattttgagcttaatcacaa 9505262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 25456114 - 25456247
Alignment:
Q  126 aaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggt 225  Q
    |||||| ||||| | ||||||||| ||| | || ||||| |  |||||||||||||| ||||  | | |||||| |||||| | || ||||| | ||| |    
T  25456114 aaaatggggagtgaggttagcatcagttcgattcatcggtttattggatctcaaaatgaaaaaccgataaccaaaccaaacaagattggtttagattgat 25456213  T
Q  226 tcggttcgattttgaatggaaccaaacaaggtcg 259  Q
    |||||||| |||||||  |||||| |||||||||    
T  25456214 tcggttcggttttgaactgaaccagacaaggtcg 25456247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 112 - 318
Target Start/End: Complemental strand, 44471234 - 44471020
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    ||||||||||||||||  || ||||| ||||||||||||||| |||| ||||| ||||||||| ||||||||||||  |||||||| | |||||||| ||    
T  44471234 ggataatattactaaac-tggggagttatgttagcatcggttcggttcatcggttctttggatttcaaaattaaaaaccaagaaccgaaccaaactagat 44471136  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtata---------tttggttcggtttgaattttcggtttcatcggttttgtc 302  Q
    |||||| | |||||| |||||| |||||||  |||| ||||||||||| |||         |||||||||||||| ||||||| ||||||||||||||||    
T  44471135 cggtttagattggtttggttcggttttgaaccgaactaaacaaggtcggatacattttcggtttggttcggtttggattttcgatttcatcggttttgtc 44471036  T
Q  303 caaaccacttacaccc 318  Q
    | ||||||||||||||    
T  44471035 cgaaccacttacaccc 44471020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 322
Target Start/End: Complemental strand, 26757813 - 26757592
Alignment:
Q  109 gaaggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaacta 208  Q
    ||||||||||||||||||||  ||| ||| | ||||  |||||||  ||||||||  ||||||||||||||||||||||| |||||||| | |||| |||    
T  26757813 gaaggataatattactaaaatggag-agtgaggttactatcggttcagtttatcgattctttggatctcaaaattaaaatccaagaaccgaaccaatcta 26757715  T
Q  209 tatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtat---------atttggttcggtttgaattttcggtttcatcggtttt 299  Q
    ||||| ||| ||||||||||||||  |||| ||   |||||||||| |||| ||         |||| ||| | |||| ||||||| |||||| ||||||    
T  26757714 tatcgatttaggttggttcggttcagttttaaactaaaccaaacaacgtcgaatactttttcgattttgtttgatttggattttcgatttcattggtttt 26757615  T
Q  300 gtccaaaccacttacacccctaa 322  Q
    |||||||||||||||||||||||    
T  26757614 gtccaaaccacttacacccctaa 26757592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 141 - 321
Target Start/End: Original strand, 44681994 - 44682161
Alignment:
Q  141 gttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttgg-ttggttcggttcgattttg 239  Q
    ||||||||||||| ||||| |||| || | |||| ||||||||||||  |||||||||| |||||||| |||||||| || ||||||| ||||| |||||    
T  44681994 gttagcatcggttcggtttgtcggttcatcggatttcaaaattaaaaaccaagaaccaaaccaaactagatcggtttaggtttggttcagttcggttttg 44682093  T
Q  240 aatggaaccaaacaaggtcgtatatttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    |   |||||||||||||||||||| |              ||||||||||||||||||||||||||||||||||||||||||    
T  44682094 atccgaaccaaacaaggtcgtatact--------------ttttcggtttcatcggttttgtccaaaccacttacaccccta 44682161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 145 - 321
Target Start/End: Original strand, 30554540 - 30554725
Alignment:
Q  145 gcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatgg 244  Q
    ||||||||| | || ||| | ||||||||| |||||||||||| || |||||| | |||||||| |||||||| | |||||||||||||||||||||  |    
T  30554540 gcatcggttcgattcatcagttctttggatatcaaaattaaaaatcgagaaccgaaccaaactagatcggtttagattggttcggttcgattttgaaccg 30554639  T
Q  245 aaccaaacaaggtcgtata---------tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    ||| ||||||||||| |||         ||| | ||| |||| |||||||||||||||| |||||| | ||||| |||||||||||    
T  30554640 aactaaacaaggtcggatactttttcggtttagctcgatttggattttcggtttcatcgattttgttcgaaccatttacaccccta 30554725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 54246636 - 54246529
Alignment:
Q  126 aaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggt 225  Q
    |||||| ||||| | ||||||||||||||||||  |||| |||||||||||||||||||||| |  |||||| | ||||||  ||||||||| |||||||    
T  54246636 aaaatggggagtgaagttagcatcggtttggttcgtcggttctttggatctcaaaattaaaaattgagaaccgaaccaaacattatcggtttgggttggt 54246537  T
Q  226 tcggttcg 233  Q
    ||||||||    
T  54246536 tcggttcg 54246529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 126 - 321
Target Start/End: Original strand, 11503308 - 11503512
Alignment:
Q  126 aaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggt 225  Q
    |||||| ||||| | |||||||| |||| |||||||||| |  |||||||||||||| |||| || |||||||| |||||  | |||||||| | |||||    
T  11503308 aaaatggggagtgaggttagcatgggttcggtttatcggtttcttggatctcaaaatgaaaaatcgagaaccaaaccaaataagatcggtttcgattggt 11503407  T
Q  226 tcggttcgattttgaatggaaccaaacaaggtcgtata---------tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacac 316  Q
    |||||||| |||||||    |||| ||||||||| |||         |||||||||||||| | |||| |||||||||||||| ||  |||| |||||||    
T  11503408 tcggttcggttttgaaccttaccagacaaggtcggatacatttttggtttggttcggtttggactttcagtttcatcggttttatcttaaccgcttacac 11503507  T
Q  317 cccta 321  Q
    |||||    
T  11503508 cccta 11503512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 13870388 - 13870208
Alignment:
Q  141 gttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttga 240  Q
    ||||||||||||| ||| | |||| ||||||||||||||||| ||||  |||||||| |  ||||| ||| |||||| ||  |||| | ||||  |||||    
T  13870388 gttagcatcggttcggtctttcggttctttggatctcaaaatcaaaaaccaagaaccgaatcaaacaataccggtttaggccggtttgattcggctttga 13870289  T
Q  241 atggaaccaaacaaggtcgtatatttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    |  |||||| ||||||||| ||| ||  ||| ||||| |||||||||||| ||||||||| |||||||  ||| |||||||    
T  13870288 accgaaccagacaaggtcggatacttttttcagtttggattttcggtttcgtcggttttgaccaaaccgtttataccccta 13870208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 33231582 - 33231638
Alignment:
Q  265 ttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  33231582 ttggtttggtttgaattttcggtttcatcgattttgtccgaaccacttacaccccta 33231638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 257
Target Start/End: Original strand, 779495 - 779611
Alignment:
Q  142 ttagcatcggtttggtttatcggatctttggatctc-aaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttga 240  Q
    |||||||||||| |||| ||||| ||||||||| || ||||||||||  |||||||| | |||||||| || ||||| |||||||||| |||  ||||||    
T  779495 ttagcatcggttcggttcatcggttctttggatttcaaaaattaaaaaccaagaaccgaaccaaactagattggtttaggttggttcgattctgttttga 779594  T
Q  241 atggaaccaaacaaggt 257  Q
    |  |||| |||||||||    
T  779595 accgaactaaacaaggt 779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 44285724 - 44285624
Alignment:
Q  166 tctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatt 265  Q
    |||||| || ||||||||||||  | |||||  | |||||||| |||| ||| ||||||||||||||| |||||||  ||||||||||||||| ||||||    
T  44285724 tctttgaatttcaaaattaaaaaccgagaactgaaccaaactaaatcgatttaggttggttcggttcggttttgaaccgaaccaaacaaggtcatatatt 44285625  T
Q  266 t 266  Q
    |    
T  44285624 t 44285624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 319
Target Start/End: Original strand, 12937725 - 12937912
Alignment:
Q  141 gttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttga 240  Q
    |||| ||||||||||||| || |||||||||||||| || || |||| |  |||||| | ||||| |  |||||||| ||||||||||||||| |||| |    
T  12937725 gttaacatcggtttggttcattggatctttggatcttaagatgaaaaattgagaaccgaaccaaaattgatcggtttaggttggttcggttcggttttca 12937824  T
Q  241 atggaaccaaacaaggtcgtat---------atttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccc 319  Q
    ||  ||||||||||  ||  ||         |||| |||||||||| |||||||||||||||| |||| ||| || ||||||||||||    
T  12937825 atcaaaccaaacaaaatctaatactttttcgatttagttcggtttggattttcggtttcatcgattttatccgaatcacttacacccc 12937912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 23659601 - 23659517
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaacc 197  Q
    |||||||||||||||||  ||| ||| ||||||||||||||| |||| | ||| || |||||||||||||||||||  ||||||||    
T  23659601 ggataatattactaaaatggag-agtgatgttagcatcggttcggttcaccggttcattggatctcaaaattaaaaaccaagaacc 23659517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 26757886 - 26757830
Alignment:
Q  9 agaaagtggataaattaaggagtattttatgttgaac-ttaattatgagcttaatca 64  Q
    |||||||| || ||||||||||||||||||||||||| |||||| ||||||||||||    
T  26757886 agaaagtgaatgaattaaggagtattttatgttgaactttaattttgagcttaatca 26757830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 23659451 - 23659400
Alignment:
Q  271 cggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaa 322  Q
    |||||||||||||||||||||||| |||||||  ||||||||| ||||||||    
T  23659451 cggtttgaattttcggtttcatcgattttgtctgaaccacttatacccctaa 23659400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 46892661 - 46892610
Alignment:
Q  264 tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttaca 315  Q
    ||||||||||||||||||||  ||||||||||||||| || |||||||||||    
T  46892661 tttggttcggtttgaattttttgtttcatcggttttgcccgaaccacttaca 46892610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23659685 - 23659623
Alignment:
Q  1 atgatagaagaaagtggataaattaaggagtattttatgttgaac-ttaattatgagcttaat 62  Q
    ||||||| |||||||| || |||||||||||||||||||||| || |||||| ||||||||||    
T  23659685 atgatagtagaaagtgaatgaattaaggagtattttatgttggactttaattttgagcttaat 23659623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 28550632 - 28550519
Alignment:
Q  141 gttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttga 240  Q
    |||| ||||| || |||| ||||| ||||| ||||||||||||||||  | |||| | | |||||||| ||| ||||  ||||||||||||||  |||||    
T  28550632 gttaacatcgattcggttcatcggttctttagatctcaaaattaaaaaccgagaatcgaaccaaactagatccgtttaagttggttcggttcggatttga 28550533  T
Q  241 atggaaccaaacaa 254  Q
    |  |||||||||||    
T  28550532 accgaaccaaacaa 28550519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 46892803 - 46892748
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatct 168  Q
    ||||||||||||||||| |||||||| | |||||||||||||||||| || ||||||    
T  46892803 ggataatattactaaaa-tgaggagtgaggttagcatcggtttggttcattggatct 46892748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 26918411 - 26918529
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    |||||||||||||||||  | ||||||  ||||||||| ||| | || ||||| |||||| ||||||||||||||| |  |||||  | |||||||| ||    
T  26918411 ggataatattactaaaatag-ggagtagggttagcatcagttcgattcatcggctctttgaatctcaaaattaaaaattgagaactgaaccaaactagat 26918509  T
Q  212 cggttttggttggttcggtt 231  Q
    |  ||| |||||||||||||    
T  26918510 caatttaggttggttcggtt 26918529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 33231481 - 33231563
Alignment:
Q  114 ataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaacc 197  Q
    ||||||||||||||| || ||||| | ||||||||||||| |||| ||||| |||| | || ||||||||||||  ||||||||    
T  33231481 ataatattactaaaa-tggggagtgaggttagcatcggttcggttcatcggttcttcgaatttcaaaattaaaaaccaagaacc 33231563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 46892877 - 46892839
Alignment:
Q  9 agaaagtggataaattaaggagtattttatgttgaactt 47  Q
    |||||||| || |||||||||||||||||||||||||||    
T  46892877 agaaagtgaatgaattaaggagtattttatgttgaactt 46892839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 22240691 - 22240655
Alignment:
Q  146 catcggtttggtttatcggatctttggatctcaaaat 182  Q
    ||||||||||||||||||| || ||||||||||||||    
T  22240691 catcggtttggtttatcggttccttggatctcaaaat 22240655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 44681905 - 44681949
Alignment:
Q  21 aattaaggagtattttatgttgaac-ttaattatgagcttaatca 64  Q
    |||||||||||||||||||||| || |||||| ||||||||||||    
T  44681905 aattaaggagtattttatgttggactttaattttgagcttaatca 44681949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 161 - 323
Target Start/End: Complemental strand, 42141417 - 42141255
Alignment:
Q  161 tcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgt 260  Q
    |||| ||||||||||||||||||||||  |||||||| | ||||| || |||| ||| |||| |||| ||||| |||||||  |||||||| |||||||     
T  42141417 tcggttctttggatctcaaaattaaaaaccaagaaccgaaccaaagtagatcgatttaggtttgttcagttcggttttgaaccgaaccaaagaaggtcga 42141318  T
Q  261 atatttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaac 323  Q
    ||||||  ||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||    
T  42141317 atatttttttcggtttggattttcggtttcatcggttttgtcctaaccacttacgcccctaac 42141255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 112 - 317
Target Start/End: Original strand, 53393124 - 53393337
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    |||||||||||||||||  ||  ||| | ||||||||||||| |||| ||||| || |||||| ||||| ||| ||  | |||||| | |||||||| ||    
T  53393124 ggataatattactaaaatggaa-agtgaggttagcatcggttcggttcatcggttcattggatttcaaagttataaaccgagaaccgaaccaaactagat 53393222  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtata---------tttggttcggtttgaattttcggtttcatcggttttgtc 302  Q
    |||||| ||||||||||||||  |||| ||  |||||||||||||||| |||         |||||||||||||| ||||||||||||||||||||||||    
T  53393223 cggtttaggttggttcggttcagttttaaaccgaaccaaacaaggtcggatacttttttggtttggttcggtttggattttcggtttcatcggttttgtc 53393322  T
Q  303 caaaccacttacacc 317  Q
    | |||||||||||||    
T  53393323 cgaaccacttacacc 53393337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 39839104 - 39839154
Alignment:
Q  272 ggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaa 322  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||||||    
T  39839104 ggtttggattttcggtttcatcggtttcgtccgaaccacttacacccctaa 39839154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 23108040 - 23108097
Alignment:
Q  264 tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    |||||||||||||| | |||||||||| | |||||||||| |||||||||||||||||    
T  23108040 tttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 23108097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 13207433 - 13207547
Alignment:
Q  201 ccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggttcggtttgaattttcggtttcatcggttttg 300  Q
    |||||||| || || || ||||||||| | |||| ||||||  |||||||||||| ||  ||| ||  ||||||||| ||||||| ||||||||||||||    
T  13207433 ccaaactagattggattaggttggttcagatcgactttgaaccgaaccaaacaagatcagatacttt-ttcggtttggattttcgatttcatcggttttg 13207531  T
Q  301 tccaaaccacttacac 316  Q
    ||| |||| |||||||    
T  13207532 tccgaaccgcttacac 13207547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8606021 - 8606067
Alignment:
Q  1 atgatagaagaaagtggataaattaaggagtattttatgttgaactt 47  Q
    ||||||| |||||||| || |||||||||||||||||||||| ||||    
T  8606021 atgataggagaaagtgaatgaattaaggagtattttatgttggactt 8606067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 33884359 - 33884412
Alignment:
Q  269 ttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaa 322  Q
    |||| ||| ||||||||||||| |||||||||||| ||||||||| || |||||    
T  33884359 ttcgttttaaattttcggtttcgtcggttttgtccgaaccacttaaacacctaa 33884412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 55106662 - 55106605
Alignment:
Q  264 tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    |||| ||||||||||||||| ||||| ||| ||||||| |||||| || |||||||||    
T  55106662 tttgtttcggtttgaatttttggttttatctgttttgttcaaaccgctaacaccccta 55106605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 4413638 - 4413518
Alignment:
Q  146 catcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatgga 245  Q
    |||||| |||||||||||| |    ||||||| |||| ||||  || |||||||  ||||||| |||||||| | ||||||||| ||| |||| ||  ||    
T  4413638 catcggattggtttatcggtttcacggatctcgaaatgaaaaaccatgaaccaaagcaaactagatcggtttcgattggttcggatcggttttaaaccga 4413539  T
Q  246 accaaacaaggtcgtatattt 266  Q
    |||||||||| ||| ||||||    
T  4413538 accaaacaagatcggatattt 4413518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 19682038 - 19682089
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcgg 164  Q
    ||||||||||||||||| |||| ||| | |||||||||||||||||| |||||    
T  19682038 ggataatattactaaaa-tgagaagtgaggttagcatcggtttggttcatcgg 19682089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 168 - 321
Target Start/End: Complemental strand, 23586015 - 23585863
Alignment:
Q  168 tttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttg 267  Q
    |||| |||||||||||||||| | |||||||| |||||||||||||||||  ||| ||| |||||| |||||||  |||| ||||||||||| ||| ||     
T  23586015 tttgaatctcaaaattaaaatccgagaaccaaaccaaactatatcggtttacgttagtttggttcggttttgaaccgaacaaaacaaggtcggatactt- 23585917  T
Q  268 gttcggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
     |||  |||  |||||| |||||||||||||||||||||| |||||||||||||    
T  23585916 tttctatttagattttcagtttcatcggttttgtccaaactacttacaccccta 23585863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 113 - 322
Target Start/End: Original strand, 2454079 - 2454296
Alignment:
Q  113 gataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatc 212  Q
    ||||| |||||||||| || ||||| | | |||||||| || ||||| | || ||||||||||||||||||||||  |||||| | | ||||||||||||    
T  2454079 gataagattactaaaa-tggggagtgaggctagcatcgattcggtttgttggttctttggatctcaaaattaaaaaccaagaatcgaaccaaactatatc 2454177  T
Q  213 ggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtata---------tttggttcggtttgaattttcggtttcatcggttttgtcc 303  Q
     |||| |||||||||||||||||||||||  ||||| || || |||| |||         |||| |||  |||||||||||  |||||||||||||||||    
T  2454178 agtttaggttggttcggttcgattttgaaccgaacctaataaagtcggatactttctcggtttgattccatttgaattttcaatttcatcggttttgtcc 2454277  T
Q  304 aaaccacttacacccctaa 322  Q
     ||||||||||| ||||||    
T  2454278 gaaccacttacatccctaa 2454296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 169 - 321
Target Start/End: Complemental strand, 23301572 - 23301411
Alignment:
Q  169 ttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtat------ 262  Q
    |||||||||||||||||||    |||||| | |||||||| ||| |||| ||||||||||||||| |||||||  |||||||||||||||| ||          
T  23301572 ttggatctcaaaattaaaaactgagaaccgaaccaaactagatcagtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcgaattatttt 23301473  T
Q  263 ---atttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
        |||||||| ||||||||||||||||||| || | ||| |||||||||||||| |||||    
T  23301472 tcggtttggttcagtttgaattttcggtttcaacgatgttgcccaaaccacttacatcccta 23301411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 11846457 - 11846311
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    ||||||||||||||||| || ||||| | | |||||||  ||||||| || || || |||||||||||||||||||  | |||||| | |||||||| ||    
T  11846457 ggataatattactaaaa-tggggagtgaggatagcatcaatttggttcattggttcattggatctcaaaattaaaaaccgagaaccgaaccaaactagat 11846359  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaaacaaggtcg 259  Q
    ||||||  |||||||| ||||| |||||||   |||||||||||||||    
T  11846358 cggtttaagttggttcagttcggttttgaaccaaaccaaacaaggtcg 11846311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 327
Target Start/End: Complemental strand, 23300586 - 23300419
Alignment:
Q  169 ttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtata----- 263  Q
    |||||||||||||||||||  | |||||| | | |||||| ||| |||| ||||||||||||||  |||||||  ||||||||||||||||  |          
T  23300586 ttggatctcaaaattaaaaaccgagaaccgaactaaactagatcagtttaggttggttcggttcagttttgaaccgaaccaaacaaggtcgatttctttt 23300487  T
Q  264 ----tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaactaat 327  Q
        |||||||||||||||||||||||||||| || | ||| |||||||||||||| ||||| |||||    
T  23300486 tcggtttggttcggtttgaattttcggtttcaacgatgttgcccaaaccacttacatccctacctaat 23300419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 318
Target Start/End: Original strand, 7176536 - 7176662
Alignment:
Q  201 ccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatattt---------ggttcggtttgaattttcggtttca 291  Q
    |||||||| |||||||| |||||||||||||||||||||||   ||||||||||||| | ||| ||         ||||||||| || ||||||||||||    
T  7176536 ccaaactagatcggtttaggttggttcggttcgattttgaaccaaaccaaacaaggttggatactttttcgggttggttcggttagagttttcggtttca 7176635  T
Q  292 tcggttttgtccaaaccacttacaccc 318  Q
    |||||||||||| || |||||||||||    
T  7176636 tcggttttgtccgaaacacttacaccc 7176662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 316
Target Start/End: Complemental strand, 9826954 - 9826742
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    |||||||||||||||||  | | ||| | |||| |||| |||||||| ||||| ||||||||| ||||||||||||  | |||| | | |||||||| ||    
T  9826954 ggataatattactaaaacgg-gaagtgaggttaacatcagtttggttcatcggttctttggatttcaaaattaaaaaccgagaatcgaaccaaactagat 9826856  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaaa-caaggtcgtata--------tttggttcggtttgaattttcggtttcatcggttttgtc 302  Q
    ||||||  |||||||||||||| |||| ||  ||||||||  ||||||| |||        |||||||| ||||||||||| |||||| |||||||| ||    
T  9826855 cggtttatgttggttcggttcggttttcaaccgaaccaaataaaggtcggatacttttcggtttggttcagtttgaatttttggtttcttcggttttctc 9826756  T
Q  303 caaaccacttacac 316  Q
    | ||||||| ||||    
T  9826755 cgaaccactaacac 9826742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 11846539 - 11846475
Alignment:
Q  1 atgatagaagaaagtggataaattaaggagtattttatgttgaac-ttaattatgagcttaatca 64  Q
    ||||| ||||||||||||| |||||||||||||| ||||||| || |||||| ||||||||||||    
T  11846539 atgatggaagaaagtggatgaattaaggagtattgtatgttggactttaattttgagcttaatca 11846475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 11971709 - 11971645
Alignment:
Q  1 atgatagaagaaagtggataaattaaggagtattttatgttgaac-ttaattatgagcttaatca 64  Q
    ||||| ||||||||||||| |||||||||||||||||||||| || |||||| |||| |||||||    
T  11971709 atgatggaagaaagtggatgaattaaggagtattttatgttggactttaattttgagattaatca 11971645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 26186810 - 26186866
Alignment:
Q  264 tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccct 320  Q
    ||||||||  ||| |||||||| ||| ||||||||||||| ||||||||||||||||    
T  26186810 tttggttcaatttaaattttcgattttatcggttttgtccgaaccacttacacccct 26186866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 5076318 - 5076272
Alignment:
Q  141 gttagcatcggtttggtttatcggatctttggatctcaaaattaaaa 187  Q
    ||||||||| |||||||||||||| ||||||||| ||||||| ||||    
T  5076318 gttagcatcagtttggtttatcggttctttggatttcaaaataaaaa 5076272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 7238296 - 7238338
Alignment:
Q  264 tttggttcggtttgaattttcggtttcatcggttttgtccaaa 306  Q
    ||||||| |||||||||||| | ||||||||||||||||||||    
T  7238296 tttggtttggtttgaatttttgttttcatcggttttgtccaaa 7238338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 9827028 - 9826972
Alignment:
Q  9 agaaagtggataaattaaggagtattttatgttgaac-ttaattatgagcttaatca 64  Q
    |||||||| || |||||||||||||||||||||| || |||||  ||||||||||||    
T  9827028 agaaagtgaatgaattaaggagtattttatgttggactttaatattgagcttaatca 9826972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 32613903 - 32613943
Alignment:
Q  201 ccaaactatatcggttttggttggttcggttcgattttgaa 241  Q
    |||||||| |||||||| ||||||||||||||| |||||||    
T  32613903 ccaaactagatcggtttaggttggttcggttcggttttgaa 32613943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 303
Target Start/End: Original strand, 1498163 - 1498362
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattca-agaaccaagccaaactata 210  Q
    ||||||||||||||||| || ||||| ||||||||||||||| |||| ||||| |  |||||||||||||| ||||| |  |||||||| |  ||||| |    
T  1498163 ggataatattactaaaa-tggggagtcatgttagcatcggttcggttcatcggtttattggatctcaaaat-aaaatactgagaaccaaacttaactaca 1498260  T
Q  211 tcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtata---------tttggttcggtttgaattttcggtttcatcggttttgt 301  Q
    ||||||| ||||||||| ||||| |||||||  |||||||||||||||| |||         |||| ||||||||| |||||||||||||||||||||||    
T  1498261 tcggtttaggttggttcagttcggttttgaaccgaaccaaacaaggtcggatattttctcagtttgattcggtttggattttcggtttcatcggttttgt 1498360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 241
Target Start/End: Original strand, 7239249 - 7239376
Alignment:
Q  113 gataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatc 212  Q
    |||||||||||||||| || | ||| | ||||||||||||| | ||||||||||||| |||||| ||||| ||||   ||||||| | ||||||||  ||    
T  7239249 gataatattactaaaa-tgggaagtgaggttagcatcggttcgatttatcggatcttgggatcttaaaataaaaaactaagaaccgaaccaaactaactc 7239347  T
Q  213 ggttttggttggttcggttcgattttgaa 241  Q
    | |||  |||||||||||||| |||||||    
T  7239348 gatttaagttggttcggttcggttttgaa 7239376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 241
Target Start/End: Original strand, 7244425 - 7244552
Alignment:
Q  113 gataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatc 212  Q
    |||||||||||||||| || | ||| | ||||||||||||| | ||||||||||||| |||||| ||||| ||||   ||||||| | ||||||||  ||    
T  7244425 gataatattactaaaa-tgggaagtgaggttagcatcggttcgatttatcggatcttgggatcttaaaataaaaaactaagaaccgaaccaaactaactc 7244523  T
Q  213 ggttttggttggttcggttcgattttgaa 241  Q
    | |||  |||||||||||||| |||||||    
T  7244524 gatttaagttggttcggttcggttttgaa 7244552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 17770401 - 17770310
Alignment:
Q  141 gttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttc 232  Q
    |||||||||||||||||| |||   ||||||||||||||| ||||||  ||||||| ||  | |||||  ||||||| ||||||||||||||    
T  17770401 gttagcatcggtttggttcatctattctttggatctcaaatttaaaaaccaagaactaaatccaactagttcggtttaggttggttcggttc 17770310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 321
Target Start/End: Complemental strand, 39786005 - 39785966
Alignment:
Q  282 ttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  39786005 ttcggtttcgtcggttttgtccaaaccacttacaccccta 39785966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 16746668 - 16746726
Alignment:
Q  263 atttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    ||||||||||||||  | |||||||||| | |||||||||| ||||||||||| |||||    
T  16746668 atttggttcggtttagactttcggtttcgttggttttgtccgaaccacttacatcccta 16746726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 141 - 322
Target Start/End: Complemental strand, 48070803 - 48070613
Alignment:
Q  141 gttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttga 240  Q
    |||| ||||||||  ||||||||| ||||||||||||||||||||||  | |||||| |  ||||||| |||||||| |||| |||||||||| ||||||    
T  48070803 gttaacatcggttcagtttatcggttctttggatctcaaaattaaaaaccgagaaccgaatcaaactagatcggtttaggttagttcggttcggttttga 48070704  T
Q  241 atggaaccaaacaaggtcgtata---------tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaa 322  Q
    |   || |||||||||||| |||         ||| |||||||||  ||||||||||| |||| |||||||| ||||||||||||||||||    
T  48070703 accaaatcaaacaaggtcggatatttttttggtttagttcggtttagattttcggtttgatcgattttgtccgaaccacttacacccctaa 48070613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 44523684 - 44523793
Alignment:
Q  156 gtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaag 255  Q
    ||||||||  ||||||| |||||||||||||| || |||||| | ||||| ||||| ||||| ||||||||||||| |||||||||  ||||||||||||    
T  44523684 gtttatcgtttctttgg-tctcaaaattaaaaatcgagaaccgaaccaaattatattggtttaggttggttcggtttgattttgaaccgaaccaaacaag 44523782  T
Q  256 gtcgtatattt 266  Q
    |||||||||||    
T  44523783 gtcgtatattt 44523793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 111 - 318
Target Start/End: Original strand, 25545175 - 25545390
Alignment:
Q  111 aggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactata 210  Q
    |||||||||||||| |||||| ||||| | |||||||| |||| | || || || ||||||||| | |||||||||| |  |||||||| |||||||| |    
T  25545175 aggataatattact-aaaatggggagtgaggttagcattggttcgattcattggttctttggattttaaaattaaaagttgagaaccaaaccaaactaga 25545273  T
Q  211 tcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtata---------tttggttcggtttgaattttcggtttcatcggttttgt 301  Q
    ||||||| ||||||||  ||||| |||||||  ||||||| |||||||| |||         ||| | |||||||||||||||| ||| |||| ||||||    
T  25545274 tcggtttaggttggtttagttcggttttgaaccgaaccaatcaaggtcgaatacttttttagttttgctcggtttgaattttcgattttatcgattttgt 25545373  T
Q  302 ccaaaccacttacaccc 318  Q
    |  ||||||||||||||    
T  25545374 ctgaaccacttacaccc 25545390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 315
Target Start/End: Original strand, 12470975 - 12471189
Alignment:
Q  109 gaaggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaacta 208  Q
    |||||||||||||||||||| || ||||| |  ||| ||||| ||  ||| ||||| | ||||||||||||||||||||    |||||| | | ||||||    
T  12470975 gaaggataatattactaaaa-tggggagtgagattaacatcgattaagttcatcggttttttggatctcaaaattaaaaactgagaaccgaactaaacta 12471073  T
Q  209 tatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtata---------tttggttcggtttgaattttcggtttcatcggtttt 299  Q
     | || ||| |||||||| ||||||||||||||  |||||||||| | ||  |||         ||| |||||||||||||| |||||||||||||||||    
T  12471074 gaccgatttaggttggttaggttcgattttgaactgaaccaaacaggatcagatactttttcagttttgttcggtttgaattctcggtttcatcggtttt 12471173  T
Q  300 gtccaaaccacttaca 315  Q
     |||||||||||||||    
T  12471174 atccaaaccacttaca 12471189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 45595546 - 45595452
Alignment:
Q  114 ataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactat 209  Q
    ||||||||||||||| || ||||| ||||||||||| ||| | |||||||||| |||| |||||||||||| ||||| |||||||| |||||||||    
T  45595546 ataatattactaaaa-tggggagtgatgttagcatcagttcgatttatcggatatttgaatctcaaaattagaattcgagaaccaaaccaaactat 45595452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 322
Target Start/End: Complemental strand, 31136357 - 31136157
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    |||||||||||||| || ||| |||| |  |||||||||||| |||| ||||| |||||||||||| |||||  ||  |||||||||| ||||| |||||    
T  31136357 ggataatattactataa-tgatgagtgagtttagcatcggttcggttcatcggttctttggatctcgaaatttgaaaccaagaaccaaaccaaattatat 31136259  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggttcggtttgaattttcggtttcatcggttttgtccaaaccact 311  Q
     ||||| |||||||||||     |||||||  ||| |||||||||||| ||| ||  |||||||||    || ||| |||||||||| |||| ||||| |    
T  31136258 tggtttaggttggttcgg-----ttttgaaccgaatcaaacaaggtcggatactt-tttcggtttg---gtttggtgtcatcggtttcgtccgaaccatt 31136168  T
Q  312 tacacccctaa 322  Q
    |||||||||||    
T  31136167 tacacccctaa 31136157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 3997071 - 3997129
Alignment:
Q  264 tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaa 322  Q
    |||||| ||||||| | |||||||||||| |||||||||| ||||||||||||||||||    
T  3997071 tttggtacggtttggactttcggtttcattggttttgtccgaaccacttacacccctaa 3997129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 250
Target Start/End: Original strand, 12471703 - 12471840
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    ||||||||||||||||| |||||||| | |||| ||||| ||  ||| ||||  |||||| |||||||||||||||   ||||||| | | |||||| ||    
T  12471703 ggataatattactaaaa-tgaggagtgaggttaacatcgattcagttcatcgattctttgaatctcaaaattaaaaactaagaaccgaactaaactagat 12471801  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaa 250  Q
    || |||  |||||||||||||| |||||||  |||||||    
T  12471802 cgatttaagttggttcggttcggttttgaacagaaccaa 12471840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 2197636 - 2197713
Alignment:
Q  109 gaaggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaa 187  Q
    |||||||||||||| ||||| || ||||| | |||||||||||||||||| ||||| |  |||||||||||||| ||||    
T  2197636 gaaggataatattagtaaaa-tggggagtgaagttagcatcggtttggttgatcggtttcttggatctcaaaatgaaaa 2197713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31136438 - 31136376
Alignment:
Q  1 atgatagaagaaagtggataaattaaggagtattttatgttgaac-ttaattatgagcttaat 62  Q
    ||||||| |||||||| || |||||||||||||||||||||| || |||||| ||||||||||    
T  31136438 atgataggagaaagtgaatgaattaaggagtattttatgttggactttaattttgagcttaat 31136376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 7995102 - 7995017
Alignment:
Q  173 atctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtc 258  Q
    |||||||||| ||||  || ||||||| |||||||| ||||||||   ||||||||| |||||||| ||  |||||||||||||||    
T  7995102 atctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcggatcgattttcaaccgaaccaaacaaggtc 7995017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 12470192 - 12470317
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    ||||||||||||||||| || ||| | |  ||||||||  ||| ||| ||||| ||||||||||||||||||| ||   ||||||  | |||||||| ||    
T  12470192 ggataatattactaaaa-tggggactgagattagcatcaatttagttcatcggttctttggatctcaaaattagaaactaagaacggaaccaaactagat 12470290  T
Q  212 cggttttggttggttcggttcgatttt 238  Q
     ||||| |||||| |||||| ||||||    
T  12470291 tggtttaggttggctcggtttgatttt 12470317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 27227032 - 27227090
Alignment:
Q  264 tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaa 322  Q
    |||| ||||||||| | ||| | ||||||||||||||||| ||| ||||||||||||||    
T  27227032 tttgtttcggtttggacttttgatttcatcggttttgtccgaacaacttacacccctaa 27227090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 321
Target Start/End: Complemental strand, 46993407 - 46993258
Alignment:
Q  171 ggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggtt 270  Q
    ||||||| |||| ||||  || ||||||| |||||||| ||| |||| | ||| ||||| || ||||  ||  || ||||||||||||| ||||||  ||    
T  46993407 ggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcggatcaatttcaaaccgacccaaacaaggtcgaatattt-ttt 46993309  T
Q  271 cggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
     | |||||| ||||  |||||||| |||||||| |||||||| ||||||||    
T  46993308 agatttgaactttcaatttcatcgattttgtccgaaccacttccaccccta 46993258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 11727440 - 11727485
Alignment:
Q  280 ttttcggtttcatcggttttgtccaaaccacttacacccctaacta 325  Q
    ||||||||||| | |||||||||||||||||||||| || ||||||    
T  11727440 ttttcggtttcgttggttttgtccaaaccacttacatccttaacta 11727485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 2923114 - 2923026
Alignment:
Q  169 ttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggt 257  Q
    |||||||||||||| |||| ||||||||| |  ||||| |  ||||| | | ||||||||||||| |||||||  |||||| |||||||    
T  2923114 ttggatctcaaaatgaaaaatcaagaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaaccatacaaggt 2923026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 11727330 - 11727410
Alignment:
Q  146 catcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggtt 226  Q
    |||||| |||||||||||| | |  ||||||| |||| ||||  || ||||||| |||||||| |||||||||| ||||||    
T  11727330 catcggattggtttatcggttttacggatctcgaaatgaaaaaccacgaaccaaaccaaactagatcggttttgattggtt 11727410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 12471862 - 12471914
Alignment:
Q  264 tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacac 316  Q
    ||| |||||||||| ||||||  ||||||||||||| ||| ||||||||||||    
T  12471862 ttttgttcggtttggattttcaatttcatcggttttatccgaaccacttacac 12471914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 25545102 - 25545158
Alignment:
Q  9 agaaagtggataaattaaggagtattttatgttgaac-ttaattatgagcttaatca 64  Q
    |||||||| || ||||| ||||||||||||||||| | |||||| ||||||||||||    
T  25545102 agaaagtgaatgaattatggagtattttatgttgacctttaattttgagcttaatca 25545158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45595637 - 45595597
Alignment:
Q  1 atgatagaagaaagtggataaattaaggagtattttatgtt 41  Q
    ||||||| |||||||| |||||| |||||||||||||||||    
T  45595637 atgataggagaaagtgaataaatcaaggagtattttatgtt 45595597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 48638219 - 48638259
Alignment:
Q  7 gaagaaagtggataaattaaggagtattttatgttgaactt 47  Q
    |||||||||| || |||||| ||||||||||||||||||||    
T  48638219 gaagaaagtgaatgaattaaagagtattttatgttgaactt 48638259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 112 - 322
Target Start/End: Complemental strand, 11911802 - 11911583
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    ||||||||||||| ||| || ||||| |  |||| |||||||||||| ||||| || | |||| ||||||||||||  ||||||| ||  ||||||| ||    
T  11911802 ggataatattactcaaa-tggggagtgagtttagtatcggtttggttcatcggttcatcggatttcaaaattaaaaaccaagaactaaatcaaactagat 11911704  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtat----------atttggttcggtttgaattttcggtttcatcggttttgt 301  Q
    |||||| ||||||||||||||| |||||||  |||||||||||||||| ||          | |||||| |||||   |||| |||||||||||||| ||    
T  11911703 cggtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcggatacttttttcgaattggtttggtttatgtttttggtttcatcggtttggt 11911604  T
Q  302 ccaaaccacttacacccctaa 322  Q
    |||||||||||||||| ||||    
T  11911603 ccaaaccacttacacctctaa 11911583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 25785910 - 25785763
Alignment:
Q  171 ggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggtt 270  Q
    ||||||| |||| ||||  || ||||||| ||||||||||||||||| | ||||||||| ||| |||  ||  |||||||||||||||| ||||||  ||    
T  25785910 ggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttcgattggttcggatcggtttcaaaccgaaccaaacaaggtcggatattt-ttt 25785812  T
Q  271 cggtttgaattttcggtttcatcggttttgtccaaaccacttacacccc 319  Q
    ||||||||| |||| ||||| | |||||||||| |||||||||||||||    
T  25785811 cggtttgaaatttcagtttcgttggttttgtccgaaccacttacacccc 25785763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 17530824 - 17530696
Alignment:
Q  109 gaaggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaacta 208  Q
    ||||||||||||||||||||  ||| ||| | ||||||||||||||||||||| || ||||||||| ||||||  |||||   |||||| | ||||| ||    
T  17530824 gaaggataatattactaaaatggag-agtgaagttagcatcggtttggtttattggttctttggatatcaaaaaaaaaatcggagaaccgaaccaaatta 17530726  T
Q  209 tatcggttttggttggttcggttcgatttt 238  Q
    |||||||||| |||||||||||||| ||||    
T  17530725 tatcggttttagttggttcggttcggtttt 17530696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 18461268 - 18461120
Alignment:
Q  171 ggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggtt 270  Q
    ||||||| |||| |||| ||| ||||||| |||||||| |||||||||| ||||| | | |||||||  ||  |||| ||||||||||| ||||||||||    
T  18461268 ggatctcgaaataaaaaatcatgaaccaaaccaaactaaatcggttttgattggtccagatcgatttgaaaccgaactaaacaaggtcggatatttggtt 18461169  T
Q  271 cggtttgaattttcggtttcatcggttttgtccaaaccacttacacccc 319  Q
     |||||| | ||| |||||| | ||||||||   |||||||||||||||    
T  18461168 tggtttggacttttggtttcgttggttttgtttgaaccacttacacccc 18461120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 513128 - 513028
Alignment:
Q  155 ggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaa 254  Q
    |||||||||| |  ||||||||||||||||||| | ||||| | |  ||||||| |||||||| ||||||||||||| | |||||||  |||||||||||    
T  513128 ggtttatcggtttattggatctcaaaattaaaaattaagaatcgaatcaaactagatcggtttaggttggttcggtttggttttgaaccgaaccaaacaa 513029  T
Q  255 g 255  Q
    |    
T  513028 g 513028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 323
Target Start/End: Original strand, 8414579 - 8414766
Alignment:
Q  145 gcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatgg 244  Q
    |||||||||  ||||||||| ||||||||||||||||||||||  | ||||   | |||||||| || |||||  ||   ||||||||  |||||||       
T  8414579 gcatcggttcagtttatcggttctttggatctcaaaattaaaaaccgagaatagaaccaaactagattggtttatgtgtcttcggttcagttttgaacca 8414678  T
Q  245 aaccaaacaaggtcgtata---------tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaac 323  Q
    ||||||||||||||| |||         ||| |||| ||||| |||||| |||||||||||||||||| ||||||||||| |||||||    
T  8414679 aaccaaacaaggtcggatactttttcggttttgttcagtttggattttcagtttcatcggttttgtccgaaccacttacatccctaac 8414766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 27320540 - 27320647
Alignment:
Q  220 gttggttcggttcgattttgaatggaaccaaacaaggtcgtata---------tttggttcggtttgaattttcggtttcatcggttttgtccaaaccac 310  Q
    |||||||||||| |||||||||  |||||||||||||||| |||         |||| ||| ||||  |||||||||||||||||||| |||||||||||    
T  27320540 gttggttcggtttgattttgaaccgaaccaaacaaggtcggatacttttttgatttgattcagtttagattttcggtttcatcggtttcgtccaaaccac 27320639  T
Q  311 ttacaccc 318  Q
    ||||||||    
T  27320640 ttacaccc 27320647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 4919543 - 4919490
Alignment:
Q  269 ttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaa 322  Q
    ||||||||||| |||||||||| ||||||||||||  |||||||||||||||||    
T  4919543 ttcggtttgaactttcggtttcgtcggttttgtccctaccacttacacccctaa 4919490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 16584993 - 16585050
Alignment:
Q  264 tttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    |||||||||||||| | |||||||||| | |||||||||| |||||||||||||||||    
T  16584993 tttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 16585050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 32678553 - 32678602
Alignment:
Q  268 gttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacc 317  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  32678553 gttcggtttgaattttcgatttcatcggttttgttcgaaccacttacacc 32678602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 32678425 - 32678518
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaac 206  Q
    ||||||||||||||||| || ||||| | ||||||||| ||| | || ||||| || |||||||||||||||||||  | |||||| ||||||||    
T  32678425 ggataatattactaaaa-tggggagtgaggttagcatcagttcgattcatcggttcattggatctcaaaattaaaaaccgagaaccgagccaaac 32678518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 15905132 - 15905186
Alignment:
Q  263 atttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacc 317  Q
    |||| |||||||||||| |||||||||| ||  |||| |||||||||||||||||    
T  15905132 atttagttcggtttgaactttcggtttcgtcaattttatccaaaccacttacacc 15905186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 11619975 - 11619934
Alignment:
Q  280 ttttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    ||||||||||| | |||||||||| |||||||||||||||||    
T  11619975 ttttcggtttcgttggttttgtccgaaccacttacaccccta 11619934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 321
Target Start/End: Original strand, 344373 - 344517
Alignment:
Q  176 tcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggttcggtt 275  Q
    |||||||||||| || |||||| | || || || | |||||| |||||||| |||||| |||||||   || |||||| ||||| ||| ||  || ||||    
T  344373 tcaaaattaaaaatcgagaaccgaaccgaagtagaccggtttaggttggtttggttcggttttgaaacaaatcaaacatggtcgaatactttttt-ggtt 344471  T
Q  276 tgaattttcggtttcatcggttttgtccaaaccacttacaccccta 321  Q
    || |||||||||||||||  |||||||| |||||||||||||||||    
T  344472 tggattttcggtttcatcacttttgtccgaaccacttacaccccta 344517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 322
Target Start/End: Complemental strand, 13950 - 13755
Alignment:
Q  126 aaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggt 225  Q
    |||||| ||||| | ||||||||||||| | || ||||| |  |||||||||||||| ||||  | | |||||| |||||  | ||| |||| | |||||    
T  13950 aaaatggggagtgaggttagcatcggttcgattcatcggtttattggatctcaaaatgaaaaaccgataaccaaaccaaataagatcagtttagattggt 13851  T
Q  226 tcggttcgattttgaatggaaccaaacaaggtcgtatatttggttcggtttgaattttcggtttcatcggttttgtccaaaccacttacacccctaa 322  Q
    ||||||||||||||||  |||||| ||||||||| |||  |  | ||||||| | |||  ||||||| | |||||||| |||| |||||||||||||    
T  13850 tcggttcgattttgaactgaaccagacaaggtcgaatacat-ttccggtttggacttttagtttcattgattttgtccgaaccgcttacacccctaa 13755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 258
Target Start/End: Complemental strand, 8384 - 8239
Alignment:
Q  112 ggataatattactaaaaatgaggagtaatgttagcatcggtttggtttatcggatctttggatctcaaaattaaaattcaagaaccaagccaaactatat 211  Q
    |||||||||||| |||| || ||||| | ||||||| | ||| |||| ||||| ||||||||||| |||||  ||| || |||||| | |||||||| ||    
T  8384 ggataatattaccaaaa-tgcggagtgaggttagcaccagttcggttcatcggctctttggatctaaaaatacaaaatcgagaaccgaaccaaactagat 8286  T
Q  212 cggttttggttggttcggttcgattttgaatggaaccaaacaaggtc 258  Q
    || ||| |||||||||  |||  |||||||  ||| |||||||||||    
T  8285 cgatttaggttggttccattcagttttgaaccgaaacaaacaaggtc 8239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 1873 - 2013
Alignment:
Q  173 atctcaaaattaaaattcaagaaccaagccaaactatatcggttttggttggttcggttcgattttgaatggaaccaaacaaggtcgtatatttggttcg 272  Q
    ||||| |||||||||  || ||||||| ||||| || ||| |||||| ||||||| | |||||||  ||  |||||||||||||||| ||||||  |||     
T  1873 atctcgaaattaaaaaccatgaaccaaaccaaagtagatcagttttgattggttccgatcgatttcaaaccgaaccaaacaaggtcggatattt-tttca 1971  T
Q  273 gtttgaattttcggtttcatcggttttgtccaaaccacttac 314  Q
     |||||| ||| |||||| | | |||||||| ||||||||||    
T  1972 atttgaacttttggtttcgttgattttgtccgaaccacttac 2013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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