View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_23 (Length: 411)
Name: NF20242_low_23
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 406
Target Start/End: Original strand, 40744046 - 40744445
Alignment:
| Q |
7 |
gttacagctggaatagttgaatgttacaggcttaagtatgcaaaacaaggtgacacaagctctctaagtatcttctggcaaattcctcagtatgcactta |
106 |
Q |
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| T |
40744046 |
gttacagctggaatagttgaatgttacaggcttaagtatgcaaaacaaggtgacacaagctctctaagtatcttctggcaaattcctcagtatgcactta |
40744145 |
T |
|
| Q |
107 |
taggagcttctgaggtttttatgtatgtaggacaattagagtttttcaatgctcaaacacctgatggattaaagagctttggaagtgcactttgcatgac |
206 |
Q |
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| T |
40744146 |
taggagcttctgaggtttttatgtatgtaggacaattagaatttttcaatgctcaaacacctgatggattaaagagctttggaagtgcactttgcatgac |
40744245 |
T |
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| Q |
207 |
aagtatctcacttgggaactatgtgagtagcttaattgttagtattgttatgaagatttcaactgaagatcacatgccaggatggatccctggaaacttg |
306 |
Q |
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| T |
40744246 |
aagtatctcacttgggaactatgtgagtagcttaattgttagtattgttatgaagatttcaactgaagatcacatgccaggatggatccctggaaacttg |
40744345 |
T |
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| Q |
307 |
aatagaggtcacttggataggtttttcttcctattggctgttttgacttctttagatttgattgcttatattgcatgtgcaaagtggtttcagaatattc |
406 |
Q |
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| T |
40744346 |
aatagaggtcacttggataggtttttcttcctattggctgttttgacttctttagatttgattgcttatattgcatgtgcaaagtggtttcagaatattc |
40744445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 71 - 394
Target Start/End: Complemental strand, 4708478 - 4708155
Alignment:
| Q |
71 |
taagtatcttctggcaaattcctcagtatgcacttataggagcttctgaggtttttatgtatgtaggacaattagagtttttcaatgctcaaacacctga |
170 |
Q |
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| T |
4708478 |
taagcatcttctggcaaatccctcagtatgcacttataggagcttctgaggtgtttatgtatgtagggcagttagagttcttcaatgctcaaacacctga |
4708379 |
T |
|
| Q |
171 |
tggattaaagagctttggaagtgcactttgcatgacaagtatctcacttgggaactatgtgagtagcttaattgttagtattgttatgaagatttcaact |
270 |
Q |
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||| |||||||| || ||||||||||||||||||||| || || ||||| |||||||| ||||||||| |||| ||| | ||||||||||| || || |
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| T |
4708378 |
tggcttaaagagtttcggaagtgcactttgcatgacatccatttcccttggcaactatgtaagtagcttacttgtcagtgtagttatgaagatctctacg |
4708279 |
T |
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| Q |
271 |
gaagatcacatgccaggatggatccctggaaacttgaatagaggtcacttggataggtttttcttcctattggctgttttgacttctttagatttgattg |
370 |
Q |
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| T |
4708278 |
gaggatcacatgccggggtggatcccagtaaacctcaataaaggtcacctagataggttttacttcctcttagccgccttgacatcgatggacttaattg |
4708179 |
T |
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| Q |
371 |
cttatattgcatgtgcaaagtggt |
394 |
Q |
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| T |
4708178 |
cctatattgcatgtgcaaagtggt |
4708155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 2745767 - 2745876
Alignment:
| Q |
97 |
tatgcacttataggagcttctgaggtttttatgtatgtaggacaattagagtttttcaatgctcaaacacctgatggattaaagagctttggaagtgcac |
196 |
Q |
| |
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|||| ||| |||||||| || || ||||| |||||||| || ||||| |||||||||||| | || ||||||||||||| || |||||||||||||||| |
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| T |
2745767 |
tatgtactaataggagcatcagaagttttcatgtatgttggtcaattggagtttttcaattcacaggcacctgatggattgaaaagctttggaagtgcac |
2745866 |
T |
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| Q |
197 |
tttgcatgac |
206 |
Q |
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| T |
2745867 |
tttgtatgac |
2745876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 397761 - 397888
Alignment:
| Q |
73 |
agtatcttctggcaaattcctcagtatgcacttataggagcttctgaggtttttatgtatgtaggacaattagagtttttcaatgctcaaacacctgatg |
172 |
Q |
| |
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||||| ||||| |||||||| ||||||| ||| | || ||||| || |||||||||||||| || || || ||||| ||||||| |||| ||||||||| |
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| T |
397761 |
agtatattctgtcaaattccacagtatgttcttgttggtgcttcagaagtttttatgtatgtgggtcagttggagttcttcaatggtcaagcacctgatg |
397860 |
T |
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| Q |
173 |
gattaaagagctttggaagtgcactttg |
200 |
Q |
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| |||| |||||||||||| ||||||| |
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| T |
397861 |
gcataaaaagctttggaagttcactttg |
397888 |
T |
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