View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_25 (Length: 378)
Name: NF20242_low_25
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 7834379 - 7834028
Alignment:
| Q |
16 |
catacatgttatctcgttagccttttgtttgtcatgaatgcaccaaatatgtacttgaaacccgaatcctcagcttgaggtccttcttgccaccagacac |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
7834379 |
catacatgttatctcgttaggcttttgtttgtcatgaatgcaccaaatatgtacttgaaacctgaatcttcagcttgaggtccttcttgccaccagacac |
7834280 |
T |
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| Q |
116 |
cattgagatcgaagtgaaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7834279 |
cattgagatcgaagtgaaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaagaacaatgtgggaagaatgttggaaaaaagaagcag |
7834180 |
T |
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| Q |
216 |
cttaaagtccagaaccgagtttttaagtatatagtaaatcaaagtataacaataattannnnnnnnnnnnnnnnggtcaggaaacaatagttattttgcc |
315 |
Q |
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| T |
7834179 |
cttaaagtccagaacaaagtttttaagtatatagtaaaccaaagtataacaataattatttttatttattttttggtcaggaaacaatagttattttgcc |
7834080 |
T |
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| Q |
316 |
atctaacaaagtacaattaatccaatgtaggaaatatcatttataatgccta |
367 |
Q |
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| T |
7834079 |
atctaacaaagtacaattaatccaatgtaggaaatatcatttataatgccta |
7834028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 7804983 - 7804630
Alignment:
| Q |
16 |
catacatgttatctcgttagccttttgtttgtcatgaatgcaccaaatatgtacttgaaacccgaatcctcagcttgaggtccttcttgccaccagacac |
115 |
Q |
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| T |
7804983 |
catacatgttatctcgttaggcttttgtttgtcatgaatgcaccaaatatgtacttgaaacctgaatcttcagcttgaggtccttcttgccaacagacac |
7804884 |
T |
|
| Q |
116 |
cattgagatcgaagtgaaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7804883 |
cattgagatcgaagtgaaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcag |
7804784 |
T |
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| Q |
216 |
c---ttaa-agtccagaaccgagtttttaagtatatagtaaatcaaagtataacaataattannnnnnnnnnnnnnnnggtcaggaaacaatagttattt |
311 |
Q |
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| T |
7804783 |
ctaattaacagtccagaaccgagtttttaagtatatagtaaaccaaagtataacaataatta--tttttattttttttggtcaggaaacaatagttattt |
7804686 |
T |
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| Q |
312 |
tgccatctaacaaagtacaattaatccaatgtaggaaatatcatttataatgccta |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7804685 |
tgccatctaacaaagtacaattaatccaatgtaggaaatatcatttataaggccta |
7804630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 366
Target Start/End: Complemental strand, 7784918 - 7784566
Alignment:
| Q |
16 |
catacatgttatctcgttagccttttgtttgtcatgaatgcaccaaatatgtacttgaaacccgaatcctcagcttgaggtccttcttgccaccagacac |
115 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
7784918 |
catatatgttatctcgttaggcttttgtttgtcatgaatgcaccaaatatgtacttgaaacccgaatcttcagcttgaggtccttcttgccaacagacac |
7784819 |
T |
|
| Q |
116 |
cattgagatcgaagtgaaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7784818 |
cattgagatcgaagtgaaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcag |
7784719 |
T |
|
| Q |
216 |
c---ttaa-agtccagaaccgagtttttaagtatatagtaaatcaaagtataacaataattannnnnnnnnnnnnnnnggtcaggaaacaatagttattt |
311 |
Q |
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| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7784718 |
ctaattaacagtccagaaccgagtttttaagtatatagtaaaccaaagtataacaataatta--tttttattttttttggtcaggaaacaatagttattt |
7784621 |
T |
|
| Q |
312 |
tgccatctaacaaagtacaattaatccaatgtaggaaatatcatttataatgcct |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7784620 |
tgccatctaacaaagtacaattaatccaatgtaggaaatatcatttataaggcct |
7784566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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