View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_28 (Length: 358)
Name: NF20242_low_28
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_28 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 32745138 - 32744799
Alignment:
| Q |
19 |
gtgccatacctcaaaacctgacggatttatactctttagccatattcaatgtctcatacaacaaattttctggtacaattccaaccacaatgcagtttgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32745138 |
gtgccatacctcaaaacctgacggatttatactctttagccatattcaatgtctcatacaacaaattttctggtacaattccaaccacaatgcagtttgc |
32745039 |
T |
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| Q |
119 |
aaactttgatgagaacaactatagaggtaatttagatctttgtggatctgttatcaatataatctgcaatcatacctccatatttccaccagcatcgaca |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32745038 |
aaactttgatgagaacaactatagaggtaattcagatctttgtggatctgttatcaatataatctgcaatcatacctccatatttccaccagcatcgaca |
32744939 |
T |
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| Q |
219 |
acgcagcatcagactgcaattgatatcgagtccttctattggagttgtgctgcatcttatgtttcagttatcattgggttagcagtaattctttgggtta |
318 |
Q |
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| T |
32744938 |
acgcaacatcagactgcaattgatatcgagtccttctattggagttgtgctgcatcttatgtttcagttatcattgggttagcagtaattctttgggtta |
32744839 |
T |
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| Q |
319 |
attctcattggtgtagggcatggttccattatgttgattt |
358 |
Q |
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| T |
32744838 |
attctcattggtgtagggcatggttccattatgttgattt |
32744799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 4912130 - 4911791
Alignment:
| Q |
19 |
gtgccatacctcaaaacctgacggatttatactctttagccatattcaatgtctcatacaacaaattttctggtacaattccaaccacaatgcagtttgc |
118 |
Q |
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| T |
4912130 |
gtgccttacctcaaaacctgactaatttatactctttagctatattcaatgtctcatataacaaattctctggtagagttccaaccacaatgcagtttgc |
4912031 |
T |
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| Q |
119 |
aaactttgatgagaacaactatagaggtaatttagatctttgtggatctgttatcaatataatctgcaatcatacctccatatttccaccagcatcgaca |
218 |
Q |
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| T |
4912030 |
aaactttgatgagaacaactatagaggtaattcagatctttgtggatctgttatcaatataacctgcaatcatacctccatttttccaccagcatcgaca |
4911931 |
T |
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| Q |
219 |
acgcagcatcagactgcaattgatatcgagtccttctattggagttgtgctgcatcttatgtttcagttatcattgggttagcagtaattctttgggtta |
318 |
Q |
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| T |
4911930 |
acgcaacatcagaccgcaattgatatggagtccttctattggagttgtgttgcatcttatgttacagttgtcattgggttagcagtaattctttgggtta |
4911831 |
T |
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| Q |
319 |
attctcattggtgtagggcatggttccattatgttgattt |
358 |
Q |
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| T |
4911830 |
attctcattggtgtagggtttggtttcgttatgttgattt |
4911791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 24 - 356
Target Start/End: Complemental strand, 2125563 - 2125231
Alignment:
| Q |
24 |
atacctcaaaacctgacggatttatactctttagccatattcaatgtctcatacaacaaattttctggtacaattccaaccacaatgcagtttgcaaact |
123 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| | |
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| T |
2125563 |
atacctcaaaacctaaatgatttatactctttagccatattcaatgtctcatacaacaaattgtctgggaaaattccaaccacaatgcagtttgcaaatt |
2125464 |
T |
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| Q |
124 |
ttgatgagaacaactatagaggtaatttagatctttgtggatctgttatcaatataatctgcaatcatacctccatatttccaccagcatcgacaacgca |
223 |
Q |
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| T |
2125463 |
ttgatgagaataactatagaggtaattcagatctttgtggatctgttctcaatataagctgcaatgata---ccattttctcaacattggagacaatgca |
2125367 |
T |
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| Q |
224 |
gcatcagactgcaattgatatcgagtccttctattggagttgtgctgcatcttatgtttcagttatcattgggttagcagta---attctttgggttaat |
320 |
Q |
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| T |
2125366 |
aaatcagactgcaatggatatggagtccttctattggggttttgctgcatcttatgtcacacttgtcattgggttggcaataattattctttgggttaat |
2125267 |
T |
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| Q |
321 |
tctcattggtgtagggcatggttccattatgttgat |
356 |
Q |
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| T |
2125266 |
tctcattggtgcatggcttggttctattatgttgat |
2125231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 5183813 - 5183912
Alignment:
| Q |
50 |
ctctttagccatattcaatgtctcatacaacaaattttctggtacaattccaaccacaatgcagtttgcaaactttgatgagaacaactatagaggtaat |
149 |
Q |
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| T |
5183813 |
ctctttagaaatcttcaatgtgtcatacaacaacctttctggaacaccacctagcacaagacaatttgcaaactttgatgagtacaactacagaggtaat |
5183912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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