View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_30 (Length: 353)
Name: NF20242_low_30
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 42960484 - 42960141
Alignment:
| Q |
1 |
gactaaaaactcaagcactcaccatccaataactacatctgcaaacttttccagtactgtgaaaaaagctacaatgatcctg-----aaaattaatgatg |
95 |
Q |
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| T |
42960484 |
gactaaaaactcaagcactcaccatccaataactacatctgcaaacttttccagtactgtgaaaaaagctacaatgatcctgcaaattaaattaatgatg |
42960385 |
T |
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| Q |
96 |
aacaaacacataaatcaaatcaaaccatgattattaactccattagcacatgccagacaacattatcatagcatataattatgtatactactaccaaaca |
195 |
Q |
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| T |
42960384 |
aacaaacacataaatcaaatcaaaccatgattattaactccatttgcacatgccagacaacattatcatagcatataattatgtatactactaccaaaca |
42960285 |
T |
|
| Q |
196 |
tgcttctgataaaggtgcacatggttctgttcaatgattgaaccgctttttaagttattgacctcgatttagccatttaaaaagcagatccgtttcttgg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42960284 |
tgcttctgataaaggtgcacatggttctgttcaatgattgaaccgctttttaagttattgacctcgatatagccatttaaaaagcagatccgtttcttgg |
42960185 |
T |
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| Q |
296 |
aacaaactc-aaagacttatactaaatcattagtaaagctcttt |
338 |
Q |
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| T |
42960184 |
aacaaactcaaaagacttatactaaatcattagtaaagctcttt |
42960141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 14905931 - 14905756
Alignment:
| Q |
1 |
gactaaaaactcaagcactcaccatccaataactacatctgcaaacttttccagtactgtgaaaaaagctacaatgatcctgaaaattaatgatgaacaa |
100 |
Q |
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| T |
14905931 |
gactaaaaactcaaggactcaccacccaataactacattagaaaacttttctagtactgtgagaaaagctgcaatgatcctgcaaattaaggatgaacaa |
14905832 |
T |
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| Q |
101 |
acacataaatcaaatcaaaccatgattattaactccattagcacatgccagacaacattatcatagcatataattatgtat |
181 |
Q |
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| T |
14905831 |
acacataaatcaaa-----caatgattattaactccattcgcacatgccagacaacattatcatagcatataattatgtat |
14905756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 13674466 - 13674598
Alignment:
| Q |
2 |
actaaaaactcaagcactcaccatccaataactacatctgcaaacttttccagtactgtgaaaaaagctacaatgatcctgaaaattaatgatgaacaaa |
101 |
Q |
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|||||||||||||| |||||||| ||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||| ||||||| |||||||||| |
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| T |
13674466 |
actaaaaactcaaggactcaccacccaataactacattagaaaacttttctagtactgtgagaaaagctacaatgatcctgcaaattaaggatgaacaaa |
13674565 |
T |
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| Q |
102 |
cacataaatcaaatcaaaccatgattattaactccatt |
139 |
Q |
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| T |
13674566 |
cacataaatcaaa-----caatgattattaactccatt |
13674598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 27563987 - 27563878
Alignment:
| Q |
66 |
aagctacaatgatcctgaaaattaatgatgaacaaacacataaatcaaatcaaaccatgattattaactccattagcacatgccagacaacattatcata |
165 |
Q |
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||||| ||||||||||| ||||||| ||||||||||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
27563987 |
aagcttcaatgatcctgcaaattaaggatgaacaaacacataaatcaaa-----caatgattgttaactccattcgcacatgccagacaacattatcata |
27563893 |
T |
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| Q |
166 |
gcatataattatgta |
180 |
Q |
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|||||||||||||| |
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| T |
27563892 |
tcatataattatgta |
27563878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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