View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20242_low_32 (Length: 349)
Name: NF20242_low_32
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 50247587 - 50247265
Alignment:
| Q |
19 |
gtcacgcatcaactcaacgatatcaaactcttctttatcatccaactcaacaaactcaacatcaaaaacctcactaagcaacatccacatactcttccaa |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50247587 |
gtcacgcatcaactcaatgatatcaaactcttctttatcatccaactcaacaaactcaacatcaaaaacctcactaagcaacatccacatactcttccaa |
50247488 |
T |
|
| Q |
119 |
gtgaaaatgtcaccgtttgtacaattaaatgcttggttcttagctttctttgtaactccagcccacacatgttgctttgccagcacacctgcatctgaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50247487 |
gtgaaaatgtcaccgtttgtacaattaaatgcttggttcttagctttctttgtaactccagcccacacatgttgctttgccagcacacctgcatctgaca |
50247388 |
T |
|
| Q |
219 |
tatcacaaaaatgctcccaagtgtatctatttcctggataccgaaacggtaaccctacatggcgacatatggcagcatacgtcgctagcatcatcatcgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
50247387 |
tatcacaaaaatgctcccaagtgtatctatttcctggataccgaaacggtaaccctacatggcgacatatcgcagcatacgtcgctagcatcatcatcgc |
50247288 |
T |
|
| Q |
319 |
gttgattgcacttcttgatgatg |
341 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
50247287 |
gttgattgcacttcttgaagatg |
50247265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 20 - 297
Target Start/End: Original strand, 27643305 - 27643582
Alignment:
| Q |
20 |
tcacgcatcaactcaacgatatcaaactcttctttatcatccaactcaacaaactcaacatcaaaaacctcactaagcaacatccacatactcttccaag |
119 |
Q |
| |
|
|||||||| ||||| || | |||||||||||| || |||| |||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27643305 |
tcacgcattaactccaccaaatcaaactcttccttgtcattcaactccacaaacttaacattaaaaacctcactaagcaacatccacatactcttccaag |
27643404 |
T |
|
| Q |
120 |
tgaaaatgtcaccgtttgtacaattaaatgcttggttcttagctttctttgtaactccagcccacacatgttgctttgccagcacacctgcatctgacat |
219 |
Q |
| |
|
|||||| ||||| ||||| ||||| || ||||||||||| || | | ||||||| |||||||||||||||| ||||| ||||| || ||||| | ||| |
|
|
| T |
27643405 |
tgaaaacatcaccatttgtgcaattgaaagcttggttcttcgcatcttctgtaactgcagcccacacatgttgttttgcaagcacgcccgcatccgtcat |
27643504 |
T |
|
| Q |
220 |
atcacaaaaatgctcccaagtgtatctatttcctggataccgaaacggtaaccctacatggcgacatatggcagcata |
297 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||||||||| ||||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
27643505 |
atcacagaaatgctcccaagtgtatttgtttcctggataacgaaaaggtaaccctaaatggtgacatatggcagcata |
27643582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 40 - 335
Target Start/End: Complemental strand, 50254703 - 50254408
Alignment:
| Q |
40 |
atcaaactcttctttatcatccaactcaacaaactcaacatcaaaaacctcactaagcaacatccacatactcttccaagtgaaaatgtcaccgtttgta |
139 |
Q |
| |
|
|||||||||||| || |||||||| || ||||||| |||| ||||| || || ||||| | |||||||||||||||| | ||||| |||||| ||||| |
|
|
| T |
50254703 |
atcaaactcttccttttcatccaaatccacaaacttaacagcaaaagtcttacaaagcaccttccacatactcttccatgcgaaaacgtcaccatttgtg |
50254604 |
T |
|
| Q |
140 |
caattaaatgcttggttcttagctttctttgtaactccagcccacacatgttgctttgccagcacacctgcatctgacatatcacaaaaatgctcccaag |
239 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||| ||||| | ||||||||| ||||||||||||| |
|
|
| T |
50254603 |
caattaaacgcttggttcttagccttctttgtaactgcagcccatacatgttgctttgccagcacacgagcatccgtcatatcacagaaatgctcccaag |
50254504 |
T |
|
| Q |
240 |
tgtatctatttcctggataccgaaacggtaaccctacatggcgacatatggcagcatacgtcgctagcatcatcatcgcgttgattgcacttcttg |
335 |
Q |
| |
|
|||| |||||||||||| | ||||||||||| ||||| ||||||||||||||||| || |||||||| | ||||| | |||| ||||||||||| |
|
|
| T |
50254503 |
tgtacctatttcctggaaaacgaaacggtaatcctacctggcgacatatggcagcgtatgtcgctagtaccatcagcatgttgtatgcacttcttg |
50254408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University