View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20242_low_35 (Length: 333)

Name: NF20242_low_35
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20242_low_35
NF20242_low_35
[»] chr4 (9 HSPs)
chr4 (10-315)||(27415809-27416114)
chr4 (47-304)||(27412862-27413115)
chr4 (234-302)||(27490160-27490232)
chr4 (40-302)||(27569734-27569989)
chr4 (71-167)||(27423546-27423642)
chr4 (114-269)||(27565711-27565857)
chr4 (117-184)||(27426120-27426187)
chr4 (119-193)||(27420676-27420748)
chr4 (226-303)||(27497181-27497263)
[»] chr5 (1 HSPs)
chr5 (227-275)||(1754907-1754955)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 27416114 - 27415809
Alignment:
Q  10 aagaaaatgcgtgtgctcaattcctgctttgaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttg 109  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27416114 aagaatatgtgtgtgctcaattcctgctttgaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttg 27416015  T
Q  110 taagttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatt 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27416014 taagttctgaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatt 27415915  T
Q  210 tcaatctaatggtcttttttcccatctttacaatttgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctcttttttgtg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27415914 tcaatctaatggtcttttttcccatctttacaatttgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctcttttttgtg 27415815  T
Q  310 ttagat 315  Q
    ||||||    
T  27415814 ttagat 27415809  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 304
Target Start/End: Complemental strand, 27413115 - 27412862
Alignment:
Q  47 ttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaagtagagga 146  Q
    |||||||| |||| |||||||||   ||||||||||||  |||||||||||| ||  ||||  ||||||  ||||||||||||||||||||  |||| ||    
T  27413115 ttcagaataccaagtcattttttaa-ttatagcaagcaatattactcatatagtcctatttcttaagtttctaagtgcaataaaccaaaaacatagaaga 27413017  T
Q  147 gctgcttgagtagtcgaattcgttttcacta-aacaaaataatatatacgctatataaagaatttcaatctaatggtc-ttttttcccatctttacaatt 244  Q
    | | ||||| |||||||||||||||||| || ||||||| ||||| ||   |  |||||   | |||||||||| |||  ||||||||||||||||||||    
T  27413016 gttacttgaatagtcgaattcgttttcattataacaaaa-aatatttatattccataaa-tttgtcaatctaatagtcactttttcccatctttacaatt 27412919  T
Q  245 tgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctctttt 304  Q
    | || | | ||||||||||||||||  | ||   ||||||||||||||||||| ||||||    
T  27412918 tcattagatgcctagtttacaaaaaaatgtc---tctactaaactatgtcagtttctttt 27412862  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 27490232 - 27490160
Alignment:
Q  234 tctttacaatttgataacaggcctag----tttacaaaaatgtctctagtctactaaactatgtcagtctctt 302  Q
    |||||||||||||||||||  ||||     |||||||||||||||||||||||||||||||||||||||||||    
T  27490232 tctttacaatttgataacattcctacgtactttacaaaaatgtctctagtctactaaactatgtcagtctctt 27490160  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 302
Target Start/End: Original strand, 27569734 - 27569989
Alignment:
Q  40 gaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaag 139  Q
    ||||||| |||| || |||| ||  ||||| ||||||||||||||   ||||| ||||||||  ||   ||| |||||||||||||||||||||||||      
T  27569734 gaaatttctcaggataccaagtccctttttttcttatagcaagcaatgttacttatataatcatatgcagtatgttcttaagtgcaataaaccaaaaaca 27569833  T
Q  140 tagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatttcaatctaatggtc-ttttttcccatcttt 238  Q
     ||||||| |  |||||||||||||||| || ||| |||||||   |||||||  | | ||||||   | |||||||||||||| ||||||| |||||||    
T  27569834 gagaggagatatttgagtagtcgaattcattgtcattaaacaa---aatatatttgttctataaa-tttctcaatctaatggtcattttttctcatcttt 27569929  T
Q  239 acaatttgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctctt 302  Q
    |||||||| ||| | | | ||||||||||||  | ||    |||||||||||||||||||||||    
T  27569930 acaatttgttaagatg-cgagtttacaaaaaaatatc---actactaaactatgtcagtctctt 27569989  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 27423642 - 27423546
Alignment:
Q  71 tcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattc 167  Q
    ||||||||||||||  |||||||||||| ||  ||||  |||||| |||||||||||||||||||||   | ||||| || ||||||||||||||||    
T  27423642 tcttatagcaagcaacattactcatatagtcatatttcataagtttttaagtgcaataaaccaaaaacacaaaggagatgtttgagtagtcgaattc 27423546  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 27565711 - 27565857
Alignment:
Q  114 ttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatttcaa 213  Q
    ||||||||||||||||||||||||  |||| ||||||||||| ||||||||||| || ||  ||||||||||   ||||||  | ||         ||||    
T  27565711 ttcttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattcattgtcgttaaacaaaat-tgatatacaattta---------tcaa 27565800  T
Q  214 tctaatggtc-ttttttcccatctttacaatttgataacaggcctagtttacaaaaa 269  Q
    |||||||||| ||||||  ||||||||||||||||||| | ||||||||||||||||    
T  27565801 tctaatggtcatttttttgcatctttacaatttgataagatgcctagtttacaaaaa 27565857  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 27426187 - 27426120
Alignment:
Q  117 ttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaa 184  Q
    |||||||| |||||||||||| ||| | |||||||||||||||| |||||| || ||| |||||||||    
T  27426187 ttaagtgcgataaaccaaaaacgtaaaagagctgcttgagtagttgaattcattctcattaaacaaaa 27426120  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 27420748 - 27420676
Alignment:
Q  119 aagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatata 193  Q
    |||||||||||||  ||| | ||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||    
T  27420748 aagtgcaataaacataaaca-tagaggatcagcttgagtagtcgaattcgttttcattaaacaaaa-aatatata 27420676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 27497181 - 27497263
Alignment:
Q  226 ttttcccatctttacaatttgataacaggcctagtttacaaaaatgt-----ctctagtctactaaactatgtcagtctcttt 303  Q
    |||||||||| || ||||||||| | | ||||||| |||||||||||     |||||||||||||||||| ||||||||||||    
T  27497181 ttttcccatcattgcaatttgattagatgcctagtatacaaaaatgtctctactctagtctactaaactacgtcagtctcttt 27497263  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 1754955 - 1754907
Alignment:
Q  227 tttcccatctttacaatttgataacaggcctagtttacaaaaatgtctc 275  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||||    
T  1754955 tttcccatctttacaatttgataagatacctagtttacaaaaatgtctc 1754907  T

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