View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_37 (Length: 327)
Name: NF20242_low_37
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 56314387 - 56314085
Alignment:
| Q |
13 |
aatatatagaacagaaattaaaggaaggg-caattgtgcttatagaaagatattgatattaacgagtgatgaagatgagtaatgatacaactatatatat |
111 |
Q |
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| T |
56314387 |
aatatatagaacagaaattaaaggaaggggcaatagtgcttatagaaagatattgatattaacgagtgatgaaaatgagtaatgatacaactatatatat |
56314288 |
T |
|
| Q |
112 |
gttattgaaatcaagggatacaggccgaataatcagagtaattagaaaaacaacctacataaagttgataactgaaatcaactggctcatgtatcaatat |
211 |
Q |
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| T |
56314287 |
gttattgaaatcaagggatacaggccgaataatcagagtaattagaaaaacaacctacataaagttgataactgaaatcaactggctcatgtatcaatat |
56314188 |
T |
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| Q |
212 |
atgtatttgcattatatagtaggtagtagggttgatgcattgcatatataaatataattaaaacttagaactgagtaattagtgattacttgaaggaggt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56314187 |
atgtatttgcattatatagtaggtagtagggttgatgcattgcatatataaatataattaaaacttagaactgagtaattagtgattacttgaaggaggt |
56314088 |
T |
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| Q |
312 |
gtt |
314 |
Q |
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| T |
56314087 |
gtt |
56314085 |
T |
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