View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_38 (Length: 326)
Name: NF20242_low_38
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 46619414 - 46619722
Alignment:
| Q |
1 |
aaatcagggttgcattgtcacttaatgacttggaattattggagctatagtgatggatgggattgatgattgtacactacttttttaggattatattatg |
100 |
Q |
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| T |
46619414 |
aaatcagggttgcattgtcacttaatgacttggaattattggagctatagtgatggatgggattgatgattgtacactacttttttaggattatattatg |
46619513 |
T |
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| Q |
101 |
tgatggattgaattgtttgtggtttatttggaagatagacatgacaaaaaagttttaccagtaaataaaatactctttccagagatagcgaaaactgaga |
200 |
Q |
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| T |
46619514 |
tgatggattgaattgtttgtggtttatttggaagatagacatgacaaaaaagttttaccagtaaataaaatactctttccagagatagcgaaaactgaga |
46619613 |
T |
|
| Q |
201 |
agctttaatggacagactgggtgtacgattcaacaactacagcttgcc--nnnnnnnnnnttgaacaacgacaatcttgtacaatgaatgaggtgggtag |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46619614 |
agctttaatggacagactgggtgtacgattcaacaactacagcttgccaaaaaaataatattgaacaacgacaatcttgtacaatgaatgaggtgggtag |
46619713 |
T |
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| Q |
299 |
gaagtgaat |
307 |
Q |
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||||||||| |
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| T |
46619714 |
gaagtgaat |
46619722 |
T |
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