View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20242_low_39 (Length: 312)

Name: NF20242_low_39
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20242_low_39
NF20242_low_39
[»] chr8 (3 HSPs)
chr8 (1-137)||(11488273-11488409)
chr8 (177-297)||(11488142-11488262)
chr8 (148-225)||(44954531-44954608)
[»] chr3 (11 HSPs)
chr3 (184-225)||(9852998-9853039)
chr3 (167-225)||(10430931-10430989)
chr3 (184-225)||(11778889-11778930)
chr3 (185-225)||(10583703-10583743)
chr3 (183-225)||(10503772-10503814)
chr3 (184-225)||(11772355-11772396)
chr3 (185-225)||(9980587-9980627)
chr3 (185-225)||(10035124-10035164)
chr3 (153-225)||(10086296-10086368)
chr3 (153-225)||(10193216-10193288)
chr3 (185-225)||(10666656-10666696)
[»] chr4 (1 HSPs)
chr4 (189-225)||(17849835-17849871)
[»] chr2 (1 HSPs)
chr2 (185-225)||(26910009-26910049)
[»] scaffold0083 (1 HSPs)
scaffold0083 (185-225)||(54510-54550)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 11488409 - 11488273
Alignment:
Q  1 ttcaacaatgtgcataagatttaatggggagtcgagtttttctcggtgtgttagtcatcaaatgaacattataaacctcatacatagatcatatatgtcg 100  Q
    ||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11488409 ttcaacaatgtgcataagattgaatggggagtcgatttttgctcggtgtgttagtcatcaaatgaacattataaacctcatacatagatcatatatgtcg 11488310  T
Q  101 aagaagttaaagaaaaacgtacctgaatcaagaatgc 137  Q
    |||||||||| ||||||||||||||||||||||||||    
T  11488309 aagaagttaaggaaaaacgtacctgaatcaagaatgc 11488273  T

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Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 11488262 - 11488142
Alignment:
Q  177 acgtcaccatttatttctataacagggatgtgagcaattttggaccaatccttcgatatatagctttctaatacagggcattccattatgtaaagtagct 276  Q
    |||||||||||||||||| | ||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |||||||||||| ||    
T  11488262 acgtcaccatttatttctttgacagggatgtgagcaattttggaccgatgcttccatatatagctttctaatacagggcattcccttatgtaaagtatct 11488163  T
Q  277 taagagagtcagggaggtttt 297  Q
    |||||||||||||||||||||    
T  11488162 taagagagtcagggaggtttt 11488142  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 44954531 - 44954608
Alignment:
Q  148 tctcttactttaccatggctcatattaggacgtcaccatttatttctataacagggatgtgagcaattttggaccaat 225  Q
    ||||||||| ||||||||||||||||  ||| |  |||| ||||||||| ||| | || | |||||||||||||||||    
T  44954531 tctcttactataccatggctcatattgtgacttggccatctatttctatgacatgaattttagcaattttggaccaat 44954608  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 9853039 - 9852998
Alignment:
Q  184 catttatttctataacagggatgtgagcaattttggaccaat 225  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  9853039 catttatttctatgacagggatgtgagcaattttggaccaat 9852998  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 10430931 - 10430989
Alignment:
Q  167 tcatattaggacgtcaccatttatttctataacagggatgtgagcaattttggaccaat 225  Q
    |||||||  ||| ||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  10430931 tcatattgtgacttcatcatttatatctatgacagggatgtgagcaattttggaccaat 10430989  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 11778889 - 11778930
Alignment:
Q  184 catttatttctataacagggatgtgagcaattttggaccaat 225  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  11778889 catttatttctatgacagggatgtgagcgattttggaccaat 11778930  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 10583743 - 10583703
Alignment:
Q  185 atttatttctataacagggatgtgagcaattttggaccaat 225  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  10583743 atttatttgtatgacagggatgtgagcaattttggaccaat 10583703  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 10503814 - 10503772
Alignment:
Q  183 ccatttatttctataacagggatgtgagcaattttggaccaat 225  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||    
T  10503814 ccatctatttctatgacagggatgtgagaaattttggaccaat 10503772  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 11772396 - 11772355
Alignment:
Q  184 catttatttctataacagggatgtgagcaattttggaccaat 225  Q
    ||||||| ||||| |||||||||||||| |||||||||||||    
T  11772396 catttatatctatgacagggatgtgagcgattttggaccaat 11772355  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 9980627 - 9980587
Alignment:
Q  185 atttatttctataacagggatgtgagcaattttggaccaat 225  Q
    |||||||  ||| ||||||||||||||||||||||||||||    
T  9980627 atttattgatatgacagggatgtgagcaattttggaccaat 9980587  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 10035164 - 10035124
Alignment:
Q  185 atttatttctataacagggatgtgagcaattttggaccaat 225  Q
    |||||| ||||| | ||||||||||||||||||||||||||    
T  10035164 atttatatctatgaaagggatgtgagcaattttggaccaat 10035124  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 10086368 - 10086296
Alignment:
Q  153 tactttaccatggctcatattaggacgtcaccatttatttctataacagggatgtgagcaattttggaccaat 225  Q
    ||||||| |||||||||||||  ||  || |||||||||| ||| ||||| ||| ||| ||||||||||||||    
T  10086368 tactttaacatggctcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaat 10086296  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 10193288 - 10193216
Alignment:
Q  153 tactttaccatggctcatattaggacgtcaccatttatttctataacagggatgtgagcaattttggaccaat 225  Q
    ||||||| |||||||||||||  ||  || |||||||||| ||| ||||| ||| ||| ||||||||||||||    
T  10193288 tactttaacatggctcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaat 10193216  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 10666696 - 10666656
Alignment:
Q  185 atttatttctataacagggatgtgagcaattttggaccaat 225  Q
    |||||||  ||| ||||||||||||||||||||||||||||    
T  10666696 atttattgatatgacagggatgtgagcaattttggaccaat 10666656  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 17849835 - 17849871
Alignment:
Q  189 atttctataacagggatgtgagcaattttggaccaat 225  Q
    |||||||| ||||||||||||||||||||||||||||    
T  17849835 atttctatgacagggatgtgagcaattttggaccaat 17849871  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 26910049 - 26910009
Alignment:
Q  185 atttatttctataacagggatgtgagcaattttggaccaat 225  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  26910049 atttatttgtatgacagggatgtgagcaattttggaccaat 26910009  T

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Target: scaffold0083 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 54510 - 54550
Alignment:
Q  185 atttatttctataacagggatgtgagcaattttggaccaat 225  Q
    |||||||  ||| ||||||||||||||||||||||||||||    
T  54510 atttattgatatgacagggatgtgagcaattttggaccaat 54550  T

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