View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_4 (Length: 768)
Name: NF20242_low_4
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 682; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 18 - 756
Target Start/End: Complemental strand, 1530452 - 1529715
Alignment:
| Q |
18 |
caacgaagatgtttgtacaactcaatgcagcttatgagactttgtcaaatccaaagcttaaagaagaatatgactttgagttgagtttgggtttgagaag |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530452 |
caacgaagatgtttgtacaactcaatgcagcttatgagactttgtcaaatccaaagcttaaagaagaatatgactttgagttgagtttgggtttgagaag |
1530353 |
T |
|
| Q |
118 |
aagtaggttgatggaacaaatggttgagttgaatagaaggtctcatacacgtatggctgcaggatcatcatcatcatggggtagtagaatgagggccaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530352 |
aagtaggttgatggaacaaatggttgagttgaatagaaggtctcatacacgtatggctgcaggatcatcatcatcatggggtagtagaatgagggccaaa |
1530253 |
T |
|
| Q |
218 |
aacaatataaccaaagatgatcataataactagtttcctttccatatgattattttgttaatgtattgtttcatataattaacattacattcattcatct |
317 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1530252 |
aacaatataaccaaagatgatcatactaactagtttcctttccatatgattattttgttaatgtattgtttcatataattaacattacattcattcatgt |
1530153 |
T |
|
| Q |
318 |
attgatccaaaaattattctttcatttatctaggtgcaactccttcaaaatatatggtggttttttatttgtaagtgggcttccaaagtattataatcgg |
417 |
Q |
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||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530152 |
attgatccaaaaattattcttccatttatttacgtgcaactccttcaaaatatatggtggttttttatttgtaagtgggcttccaaagtattataatcgg |
1530053 |
T |
|
| Q |
418 |
attgctattannnnnnnngtgtaaattggtattttcggcgcactacggtagagattgatctattgaagtggatggaaattggaatcataatttatggcaa |
517 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530052 |
attgctatta-tttttttgtgtaaattggtattttcggcgcactacggtagagattgatctattgaagtggatggaaattggaatcataatttatggcaa |
1529954 |
T |
|
| Q |
518 |
aaatctcactcaaaagtttcgagatgttggtacattcccatatgttactgtaccgcttcacaatgggagaatatattaaaccttaacggcatgtttggtg |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1529953 |
aaatctcactcaaaagtttcgagatgttggtacattcccatatgttactgtaccgcttcacaatgggagaatatattaaaccttaacagcatgtttggtg |
1529854 |
T |
|
| Q |
618 |
cgcatgataacgggacaggatatgattggattatatcctgactcaatccgctgtttggtgtactaaccgtttgatgtactaaccggaaatgataagttta |
717 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1529853 |
cgcatgataacgggacaggatatgattagattatatcctgactcaatccgctgtttggtgtactaaccgtttgatgtactaaccggaaatgataagttta |
1529754 |
T |
|
| Q |
718 |
acttatttttaatcatatcctactcctcctttgttgttc |
756 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
1529753 |
acttatttttaatcatatcctactcctcctttgttgttc |
1529715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 1516222 - 1515896
Alignment:
| Q |
18 |
caacgaagatgtttgtacaactcaatgcagcttatgagactttgtcaaatccaaagcttaaagaagaatatgactttgagttgagtttgggtttgagaag |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516222 |
caacgaagatgtttgtacaactcaatgcagcttatgagactttgtcaaatccaaagcttaaagaagaatatgactttgagttgagtttgggtttgagaag |
1516123 |
T |
|
| Q |
118 |
aagtaggttgatggaacaaatggttgagttgaatagaaggtctcatacacgtatggctgcaggatcatcatcatcatggggtagtagaatgagggccaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1516122 |
aagtaggttgatggaacaaatggttgagttgaatagaaggtctcatacacgtatggctgcaggatcatcatcatcatggggtagtagaatgagggccaaa |
1516023 |
T |
|
| Q |
218 |
aacaatataaccaaagatgatcataataactagtttcctttccatatgattattttgttaatgtattgtttcatataattaacattacattcattcatct |
317 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1516022 |
aacaatataaccaaagatgatcatactaactagtttcctttccatatgattattttgttaatgtattgtttcatataattaacattacattcattcatgt |
1515923 |
T |
|
| Q |
318 |
attgatccaaaaattattctttcattt |
344 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
1515922 |
attgatccaaaaattattctttcattt |
1515896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 190 - 342
Target Start/End: Original strand, 7978452 - 7978615
Alignment:
| Q |
190 |
atcatggggtagtagaatgagggccaaaaacaa---tataaccaaagatgatcataataactagt-----------ttcctttccatatgattattttgt |
275 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||||| | |||||||||||| |
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| T |
7978452 |
atcatggggtaggagaatgagggccaaaaacaatactatcaacaaagatgatcataataactagtttttttcaagcttcctttcactgtgattattttgt |
7978551 |
T |
|
| Q |
276 |
taatgtattgtttcatataattaacattacattcattcatctattgatccaaaaattattctttcat |
342 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||||| |||||||||||| | ||||||||||| |
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| T |
7978552 |
---tgtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctttcat |
7978615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 677
Target Start/End: Original strand, 22573080 - 22573150
Alignment:
| Q |
610 |
gtttggtgcgcatgataacgggacaggatatgattggatta---tatcctgactcaatccgctgtttggtg |
677 |
Q |
| |
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|||||||||||||||||| | |||| ||||||||| || || ||||||||||||||||| ||||||||| |
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| T |
22573080 |
gtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtg |
22573150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 703 - 755
Target Start/End: Original strand, 32889976 - 32890028
Alignment:
| Q |
703 |
gaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgtt |
755 |
Q |
| |
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||||||||||||||||| ||||| ||||| ||||| ||| ||||||||||||| |
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| T |
32889976 |
gaaatgataagtttaacctatttctaatcctatcccacttctcctttgttgtt |
32890028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 703 - 752
Target Start/End: Original strand, 10026462 - 10026511
Alignment:
| Q |
703 |
gaaatgataagtttaacttatttttaatcatatcctactcctcctttgtt |
752 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
10026462 |
gaaatgataagtttaacctatttctaatcatatcccactcctcctttgtt |
10026511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 703 - 752
Target Start/End: Original strand, 22202951 - 22203000
Alignment:
| Q |
703 |
gaaatgataagtttaacttatttttaatcatatcctactcctcctttgtt |
752 |
Q |
| |
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||||||||||||||||| ||||||||||| |||||||| |||| |||||| |
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|
| T |
22202951 |
gaaatgataagtttaacctatttttaatcctatcctacccctcttttgtt |
22203000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 686 - 742
Target Start/End: Original strand, 26183662 - 26183718
Alignment:
| Q |
686 |
gtttgatgtactaaccggaaatgataagtttaacttatttttaatcatatcctactc |
742 |
Q |
| |
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|||||||| || ||| |||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
26183662 |
gtttgatgcaccaacaggaaatgataagtttaacatatttctaatcctatcctactc |
26183718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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