View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20242_low_40 (Length: 308)
Name: NF20242_low_40
Description: NF20242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20242_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 62 - 290
Target Start/End: Original strand, 43061114 - 43061342
Alignment:
| Q |
62 |
acagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgttggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccata |
161 |
Q |
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| T |
43061114 |
acagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgttggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccata |
43061213 |
T |
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| Q |
162 |
ttaatttctgagtagtggctgctatagtctgatattcagcttcagttgatgattttgcaactgttggctgcttcttgcatgaccaagagataatattaag |
261 |
Q |
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| T |
43061214 |
ttaattcctgagtagtggctgctatagtccgatattcagcttcagttgatgattttgcaactgttggctgcttcttgcatgaccaagagataatattagg |
43061313 |
T |
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| Q |
262 |
gccaaaataaattaaataagcacctgttc |
290 |
Q |
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| T |
43061314 |
gccaaaataaatgaaataagcacctgttc |
43061342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 4775753 - 4775980
Alignment:
| Q |
62 |
acagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgttggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccata |
161 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775753 |
acagggtttgcacatagatatgtagctccaatgttgtcttagaatattgttggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccata |
4775852 |
T |
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| Q |
162 |
ttaatttctgagtagtggctgctatagtctgatattcagcttcagttgatgattttgcaactgttggctgcttcttgcatgaccaagagataatattaag |
261 |
Q |
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| T |
4775853 |
ttaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgttggttgcttcttgcatgaccaagagataatattagg |
4775952 |
T |
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| Q |
262 |
gccaaaataaattaaataagcacctgtt |
289 |
Q |
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| T |
4775953 |
gccaaaataaattaaataagcacctgtt |
4775980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 45192908 - 45192874
Alignment:
| Q |
62 |
acagggtttgcacatagatatgtagctctaatgtt |
96 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
45192908 |
acagggtttgcacatagatatgtagctccaatgtt |
45192874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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